Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G47840 - ( HXK3 (HEXOKINASE 3) ATP binding / fructokinase/ glucokinase/ hexokinase )

11 Proteins interacs with AT1G47840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G29130

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1683

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0090

Unknown

HISTONE H4
AT1G50460

Predicted

Phenotypic Enhancement

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.3565

Unknown

HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G19860

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.0530

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G12110

Predicted

interaction prediction

FSW = 0.0087

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G05060

Predicted

Affinity Capture-MS

FSW = 0.0388

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G06720

Predicted

interaction prediction

FSW = 0.0305

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT3G20040

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.5316

Unknown

ATHXK4 ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G16980

Predicted

Affinity Capture-MS

FSW = 0.0627

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G02690

Predicted

two hybrid

FSW = 0.0316

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT4G37840

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

FSW = 0.1973

Unknown

HKL3 (HEXOKINASE-LIKE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454