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AT1G48030 - ( mtLPD1 (mitochondrial lipoamide dehydrogenase 1) ATP binding / dihydrolipoyl dehydrogenase )

19 Proteins interacs with AT1G48030

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G42980	Experimental enzymatic study	FSW = 0.0140	Class A: plastid mitochondrion Class B: plasma membrane peroxisome extracellular cytosol Class D: cytosol (p = 0.67)	ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT3G17240	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3636	Class C: plastid mitochondrion	MTLPD2 (LIPOAMIDE DEHYDROGENASE 2) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE
AT2G29080	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0559	Class C: plastid mitochondrion	FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE
AT1G07510	Predicted Affinity Capture-MS	FSW = 0.0580	Class C: plastid mitochondrion	FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G49630	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1559	Class C: plastid mitochondrion	ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING
AT3G16950	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.0305	Class C: plastid	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT4G16155	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.4000	Class C: plastid	DIHYDROLIPOYL DEHYDROGENASE
AT5G50850	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0620	Class C: mitochondrion	MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT1G54220	Predicted in vitro Enriched domain pair Co-expression	FSW = 0.1778	Class C: mitochondrion	DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE
AT3G55410	Predicted Affinity Capture-MS Affinity Capture-MS in vitro	FSW = 0.1159	Class C: mitochondrion	2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT5G65750	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0860	Class C: mitochondrion	2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT4G26910	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0494	Class C: mitochondrion	2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT4G35260	Predicted Phenotypic Suppression	FSW = 0.0404	Class C: mitochondrion	IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT4G16210	Predicted interaction prediction	FSW = 0.0395	Unknown	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) CATALYTIC
AT3G06860	Predicted two hybrid	FSW = 0.0395	Unknown	MFP2 (MULTIFUNCTIONAL PROTEIN 2) 3-HYDROXYACYL-COA DEHYDROGENASE/ ENOYL-COA HYDRATASE
AT3G24170	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2500	Unknown	ATGR1 (GLUTATHIONE-DISULFIDE REDUCTASE) FAD BINDING / NADP OR NADPH BINDING / GLUTATHIONE-DISULFIDE REDUCTASE/ OXIDOREDUCTASE
AT3G55770	Predicted two hybrid	FSW = 0.0346	Unknown	LIM DOMAIN-CONTAINING PROTEIN
AT4G14300	Predicted interaction prediction	FSW = 0.0331	Unknown	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT3G13224	Predicted two hybrid	FSW = 0.0331	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G48030 - ( mtLPD1 (mitochondrial lipoamide dehydrogenase 1) ATP binding / dihydrolipoyl dehydrogenase )

Class A:

Class B:

Class D:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite