Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48050 - ( KU80 double-stranded DNA binding / protein binding )

19 Proteins interacs with AT1G48050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16970

Experimental

two hybrid

FSW = 0.2593

Class A:

nucleus

cytosol

Class B:

peroxisome

Class D:

nucleus (p = 0.78)

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT4G38130

Experimental

pull down

FSW = 0.0284

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT4G13870

Experimental

coimmunoprecipitation

pull down

FSW = 0.0726

Unknown

WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT3G54610

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

FSW = 0.0247

Class C:

nucleus

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G16820

Predicted

in vitro

FSW = 0.0851

Class C:

nucleus

HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G03720

Predicted

in vitro

FSW = 0.0426

Class C:

nucleus

AT-HSFA3 DNA BINDING / TRANSCRIPTION FACTOR
AT1G67970

Predicted

in vitro

FSW = 0.0711

Class C:

nucleus

AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR
AT2G29570

Predicted

in vivo

in vitro

FSW = 0.0919

Class C:

nucleus

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT5G56000

Predicted

two hybrid

FSW = 0.0714

Class C:

cytosol

HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT2G31970

Predicted

Synthetic Rescue

FSW = 0.0372

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G63960

Predicted

in vivo

FSW = 0.0667

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37560

Predicted

in vivo

FSW = 0.0105

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT5G20850

Predicted

Phenotypic Enhancement

FSW = 0.0273

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT4G11330

Predicted

two hybrid

FSW = 0.0400

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT5G04180

Predicted

two hybrid

FSW = 0.0455

Unknown

ACA3 (ALPHA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE/ ZINC ION BINDING
AT3G23590

Predicted

in vivo

in vitro

in vivo

in vitro

FSW = 0.1559

Unknown

RFR1 (REF4-RELATED 1)
AT5G16850

Predicted

in vivo

in vitro

FSW = 0.1481

Unknown

ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE
AT5G27680

Predicted

in vivo

in vivo

in vitro

in vitro

FSW = 0.1341

Unknown

RECQSIM (ARABIDOPSIS RECQ HELICASE SIM) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G67100

Predicted

in vivo

FSW = 0.0417

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454