Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48160 - ( signal recognition particle 19 kDa protein putative / SRP19 putative )
25 Proteins interacs with AT1G48160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G58230 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0058
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT2G31660 | Predictedin vitro | FSW = 0.0336
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0180
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0062
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G22310 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT1G48900 | Predictedin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-purificationAffinity Capture-MSCo-purificationinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2647
| Unknown | SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 3 / SRP54 (SRP-54C) |
AT1G15310 | Predictedinterologs mappingCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationinterologs mappingEnriched domain pairCo-expression | FSW = 0.1214
| Unknown | ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G42620 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT2G16950 | Predictedin vitro | FSW = 0.0060
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G59020 | Predictedin vitro | FSW = 0.0646
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT5G49310 | Predictedin vitroAffinity Capture-MS | FSW = 0.0259
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G66970 | Predictedin vitroAffinity Capture-MS | FSW = 0.0282
| Unknown | GTP BINDING |
AT1G67680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1078
| Unknown | 7S RNA BINDING |
AT2G13100 | PredictedPhenotypic Enhancement | FSW = 0.0334
| Unknown | GLYCEROL-3-PHOSPHATE TRANSPORTER PUTATIVE / GLYCEROL 3-PHOSPHATE PERMEASE PUTATIVE |
AT3G01160 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | UNKNOWN PROTEIN |
AT3G07950 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0290
| Unknown | RHOMBOID PROTEIN-RELATED |
AT4G12460 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Unknown | ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING |
AT4G32720 | PredictedAffinity Capture-MS | FSW = 0.0849
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT5G08415 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
AT5G27740 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09270 | PredictedAffinity Capture-MSin vitro | FSW = 0.0237
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G67650 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1048
| Unknown | 7S RNA BINDING |
AT5G04430 | Predictedtwo hybridinteraction prediction | FSW = 0.0212
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454