Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48160 - ( signal recognition particle 19 kDa protein putative / SRP19 putative )

25 Proteins interacs with AT1G48160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G58230

Predicted

Affinity Capture-MS

FSW = 0.0091

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.0058

Unknown

CALCIUM-TRANSPORTING ATPASE
AT2G31660Predicted

in vitro

FSW = 0.0336

Unknown

SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT3G10330

Predicted

interaction prediction

FSW = 0.0180

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G41630

Predicted

two hybrid

FSW = 0.0163

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G10130

Predicted

interologs mapping

FSW = 0.0062

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT2G22310

Predicted

Affinity Capture-MS

FSW = 0.0197

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT1G48900

Predicted

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Co-purification

Affinity Capture-MS

Co-purification

interologs mapping

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2647

Unknown

SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 3 / SRP54 (SRP-54C)
AT1G15310

Predicted

interologs mapping

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Co-purification

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.1214

Unknown

ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G42620

Predicted

two hybrid

FSW = 0.0357

Unknown

METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT2G16950

Predicted

in vitro

FSW = 0.0060

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G59020

Predicted

in vitro

FSW = 0.0646

Unknown

BINDING / PROTEIN TRANSPORTER
AT5G49310

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0259

Unknown

IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT5G66970

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0282

Unknown

GTP BINDING
AT1G67680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.1078

Unknown

7S RNA BINDING
AT2G13100

Predicted

Phenotypic Enhancement

FSW = 0.0334

Unknown

GLYCEROL-3-PHOSPHATE TRANSPORTER PUTATIVE / GLYCEROL 3-PHOSPHATE PERMEASE PUTATIVE
AT3G01160

Predicted

Affinity Capture-MS

FSW = 0.0207

Unknown

UNKNOWN PROTEIN
AT3G07950

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0290

Unknown

RHOMBOID PROTEIN-RELATED
AT4G12460

Predicted

Phenotypic Enhancement

FSW = 0.0212

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT4G32720

Predicted

Affinity Capture-MS

FSW = 0.0849

Unknown

ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT5G08415

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

LIPOIC ACID SYNTHASE FAMILY PROTEIN
AT5G27740

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G09270

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0237

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G67650

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.1048

Unknown

7S RNA BINDING
AT5G04430

Predicted

two hybrid

interaction prediction

FSW = 0.0212

Unknown

BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454