Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48410 - ( AGO1 (ARGONAUTE 1) endoribonuclease/ miRNA binding / protein binding / siRNA binding )

12 Proteins interacs with AT1G48410
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09700

Experimental

protein complementation assay

split-reporter assay

FSW = 0.2092

Class D:

nucleus (p = 0.78)

HYL1 (HYPONASTIC LEAVES 1) DOUBLE-STRANDED RNA BINDING / MIRNA BINDING / PROTEIN BINDING
AT1G01183Experimental

Affinity Capture-Western

affinity technology

FSW = 0.2667

Unknown

HYL1 (HYPONASTIC LEAVES 1) DOUBLE-STRANDED RNA BINDING / MIRNA BINDING / PROTEIN BINDING
AT5G47010

Predicted

Shared biological function

Co-expression

FSW = 0.1516

Unknown

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT3G03300

Predicted

Shared biological function

Co-expression

FSW = 0.5765

Unknown

DCL2 (DICER-LIKE 2) ATP BINDING / ATP-DEPENDENT HELICASE/ RNA BINDING / DOUBLE-STRANDED RNA BINDING / HELICASE/ NUCLEIC ACID BINDING / RIBONUCLEASE III
AT2G27040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4458

Unknown

AGO4 (ARGONAUTE 4) NUCLEIC ACID BINDING
AT5G20320

Predicted

Shared biological function

Co-expression

FSW = 0.5414

Unknown

DCL4 (DICER-LIKE 4) RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT1G01040

Predicted

Affinity Capture-Western

in vivo

Shared biological function

Co-expression

FSW = 0.3876

Unknown

DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT5G43810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7171

Unknown

ZLL (ZWILLE) TRANSLATION INITIATION FACTOR
AT1G69770

Predicted

Shared biological function

Co-expression

FSW = 0.2133

Unknown

CMT3 (CHROMOMETHYLASE 3) DNA (CYTOSINE-5-)-METHYLTRANSFERASE
AT1G69440

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.8182

Unknown

AGO7 (ARGONAUTE7) NUCLEIC ACID BINDING
AT2G27880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7000

Unknown

AGO5 (ARGONAUTE 5) NUCLEIC ACID BINDING
AT5G21030

Predicted

Phylogenetic profile method

FSW = 0.5830

Unknown

PAZ DOMAIN-CONTAINING PROTEIN / PIWI DOMAIN-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454