Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48605 - ( ATHAL3B FMN binding / electron carrier/ phosphopantothenoylcysteine decarboxylase )
18 Proteins interacs with AT1G48605Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G27530 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G44680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0457
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G63810 | PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT3G20970 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0392
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridSynthetic LethalityAffinity Capture-Westerninterologs mapping | FSW = 0.0554
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G46710 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridinterologs mapping | FSW = 0.1340
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G59845 | PredictedSynthetic Lethality | FSW = 0.0928
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT4G36070 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G23080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0458
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0505
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G18030 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.3205
| Unknown | ATHAL3A FMN BINDING / PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454