Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48970 - ( GTP binding / translation initiation factor )
12 Proteins interacs with AT1G48970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20920 | PredictedAffinity Capture-MS | FSW = 0.3876
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT2G40290 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0871
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G11710 | PredictedSynthetic Lethality | FSW = 0.1793
| Unknown | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G04170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2338
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G25420 | PredictedAffinity Capture-MS | FSW = 0.2297
| Unknown | UNKNOWN PROTEIN |
AT1G53880 | PredictedSynthetic RescueSynthetic RescuePhenotypic SuppressionPhenotypic SuppressionPhenotypic Enhancementinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3281
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G34970 | PredictedReconstituted Complexinterologs mappingCo-purificationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted ComplexCo-purificationco-fractionationCo-fractionationinterologs mapping | FSW = 0.5797
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
AT3G07300 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3344
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G59410 | PredictedSynthetic RescuePhenotypic SuppressionPhenotypic Suppressioninterologs mapping | FSW = 0.0676
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G49660 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G19710 | PredictedAffinity Capture-MS | FSW = 0.3737
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454