Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G49540 - ( nucleotide binding )

72 Proteins interacs with AT1G49540
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19740

Predicted

Phenotypic Enhancement

FSW = 0.1021

Unknown

PEPTIDASE M28 FAMILY PROTEIN
AT2G28190

Predicted

Phenotypic Enhancement

FSW = 0.0880

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT5G63110

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1246

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1405

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1219

Unknown

SEC22 TRANSPORTER
AT1G20090

Predicted

Synthetic Lethality

FSW = 0.0260

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G35020

Predicted

Synthetic Lethality

FSW = 0.0160

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT4G26110

Predicted

Synthetic Lethality

FSW = 0.0610

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480

Predicted

Synthetic Lethality

FSW = 0.0372

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G20970Predicted

Synthetic Rescue

FSW = 0.0941

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT5G57015

Predicted

Affinity Capture-MS

FSW = 0.0180

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT4G26720

Predicted

Phenotypic Suppression

FSW = 0.0371

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G67270

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1521

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G54610

Predicted

Synthetic Lethality

FSW = 0.0959

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G09920

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1738

Unknown

NRPB4 DNA-DIRECTED RNA POLYMERASE
AT3G13940

Predicted

Phenotypic Suppression

FSW = 0.0983

Unknown

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G38130

Predicted

Synthetic Lethality

FSW = 0.0664

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G47620

Predicted

Phenotypic Enhancement

FSW = 0.0373

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G15430

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1684

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G06210

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1511

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.1944

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.1706

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.0686

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G47690

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1151

Unknown

ATEB1A MICROTUBULE BINDING
AT3G02580

Predicted

Phenotypic Enhancement

FSW = 0.0298

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.1941

Unknown

SOH1 FAMILY PROTEIN
AT4G21710

Predicted

Co-purification

Affinity Capture-Western

FSW = 0.1065

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G15400

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0806

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G09020

Predicted

Phenotypic Enhancement

FSW = 0.0124

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G13870

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.1505

Unknown

DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING
AT1G15780

Predicted

Synthetic Lethality

FSW = 0.1548

Unknown

UNKNOWN PROTEIN
AT1G34150

Predicted

Phenotypic Enhancement

FSW = 0.1598

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G04160

Predicted

Synthetic Lethality

FSW = 0.0178

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.1615

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Enhancement

FSW = 0.1231

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G54140

Predicted

Affinity Capture-MS

FSW = 0.1350

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2099

Unknown

SNL5 (SIN3-LIKE 5)
AT1G61040

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1654

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G79730

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1975

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G02760

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1638

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G15910

Predicted

Affinity Capture-Western

FSW = 0.0181

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT3G21060

Predicted

Synthetic Lethality

FSW = 0.1774

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142

Predicted

Phenotypic Enhancement

FSW = 0.2055

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G42660

Predicted

Phenotypic Suppression

FSW = 0.1655

Unknown

NUCLEOTIDE BINDING
AT5G09230

Predicted

Phenotypic Enhancement

FSW = 0.0337

Unknown

SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G13680

Predicted

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interaction prediction

FSW = 0.5420

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G23290

Predicted

Phenotypic Enhancement

FSW = 0.0851

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.1011

Unknown

BINDING
AT5G43500

Predicted

Phenotypic Enhancement

FSW = 0.0847

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

Phenotypic Enhancement

FSW = 0.1900

Unknown

GAS41 PROTEIN BINDING
AT5G50320

Predicted

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interaction prediction

FSW = 0.6506

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G58003

Predicted

Synthetic Lethality

FSW = 0.1638

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G61770

Predicted

Phenotypic Suppression

FSW = 0.0153

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT1G51310

Predicted

Phenotypic Suppression

FSW = 0.0898

Unknown

TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1697

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G64550

Predicted

Phenotypic Enhancement

FSW = 0.0251

Unknown

ATGCN3 TRANSPORTER
AT2G28390

Predicted

Phenotypic Enhancement

FSW = 0.0832

Unknown

SAND FAMILY PROTEIN
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.1106

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G22320

Predicted

Co-purification

Affinity Capture-Western

FSW = 0.0904

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G04210

Predicted

Phenotypic Suppression

FSW = 0.0694

Unknown

PUX4 PROTEIN BINDING
AT5G10400Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0827

Unknown

HISTONE H3
AT5G41700

Predicted

Phenotypic Suppression

FSW = 0.0601

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.0845

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G56075

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT5G56060

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT1G55255Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0696

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT1G14400

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0907

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.0602

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G10450

Predicted

Synthetic Lethality

FSW = 0.1200

Unknown

SNL6 (SIN3-LIKE 6)
AT1G09200Predicted

Synthetic Lethality

FSW = 0.0627

Unknown

HISTONE H3
AT1G20320

Predicted

Synthetic Lethality

FSW = 0.1216

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454