Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G49540 - ( nucleotide binding )
72 Proteins interacs with AT1G49540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19740 | PredictedPhenotypic Enhancement | FSW = 0.1021
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.0880
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT5G63110 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1246
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT4G35800 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1405
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1219
| Unknown | SEC22 TRANSPORTER |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0260
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G35020 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT4G26110 | PredictedSynthetic Lethality | FSW = 0.0610
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedSynthetic Lethality | FSW = 0.0372
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT1G20970 | PredictedSynthetic Rescue | FSW = 0.0941
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT5G57015 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G26720 | PredictedPhenotypic Suppression | FSW = 0.0371
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G67270 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1521
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G54610 | PredictedSynthetic Lethality | FSW = 0.0959
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G09920 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1738
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT3G13940 | PredictedPhenotypic Suppression | FSW = 0.0983
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G38130 | PredictedSynthetic Lethality | FSW = 0.0664
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0373
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G15430 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1684
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G06210 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1511
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G44950 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1944
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.1706
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0686
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G47690 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1151
| Unknown | ATEB1A MICROTUBULE BINDING |
AT3G02580 | PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.1941
| Unknown | SOH1 FAMILY PROTEIN |
AT4G21710 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.1065
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G15400 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0806
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G09020 | PredictedPhenotypic Enhancement | FSW = 0.0124
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G13870 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.1505
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G15780 | PredictedSynthetic Lethality | FSW = 0.1548
| Unknown | UNKNOWN PROTEIN |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.1598
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G04160 | PredictedSynthetic Lethality | FSW = 0.0178
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G08780 | PredictedPhenotypic Enhancement | FSW = 0.1615
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedPhenotypic Enhancement | FSW = 0.1231
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G54140 | PredictedAffinity Capture-MS | FSW = 0.1350
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G59890 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2099
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G61040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1654
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G79730 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1975
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G02760 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1638
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G15910 | PredictedAffinity Capture-Western | FSW = 0.0181
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT3G21060 | PredictedSynthetic Lethality | FSW = 0.1774
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22142 | PredictedPhenotypic Enhancement | FSW = 0.2055
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT3G42660 | PredictedPhenotypic Suppression | FSW = 0.1655
| Unknown | NUCLEOTIDE BINDING |
AT5G09230 | PredictedPhenotypic Enhancement | FSW = 0.0337
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G13680 | PredictedCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninteraction prediction | FSW = 0.5420
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G23290 | PredictedPhenotypic Enhancement | FSW = 0.0851
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.1011
| Unknown | BINDING |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.0847
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.1900
| Unknown | GAS41 PROTEIN BINDING |
AT5G50320 | PredictedCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninteraction prediction | FSW = 0.6506
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G58003 | PredictedSynthetic Lethality | FSW = 0.1638
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G61770 | PredictedPhenotypic Suppression | FSW = 0.0153
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT1G51310 | PredictedPhenotypic Suppression | FSW = 0.0898
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.1697
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G64550 | PredictedPhenotypic Enhancement | FSW = 0.0251
| Unknown | ATGCN3 TRANSPORTER |
AT2G28390 | PredictedPhenotypic Enhancement | FSW = 0.0832
| Unknown | SAND FAMILY PROTEIN |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.1106
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G22320 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.0904
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G04210 | PredictedPhenotypic Suppression | FSW = 0.0694
| Unknown | PUX4 PROTEIN BINDING |
AT5G10400 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0827
| Unknown | HISTONE H3 |
AT5G41700 | PredictedPhenotypic Suppression | FSW = 0.0601
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G56075 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G56060 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT1G55255 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0696
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT1G14400 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0907
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.0602
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G10450 | PredictedSynthetic Lethality | FSW = 0.1200
| Unknown | SNL6 (SIN3-LIKE 6) |
AT1G09200 | PredictedSynthetic Lethality | FSW = 0.0627
| Unknown | HISTONE H3 |
AT1G20320 | PredictedSynthetic Lethality | FSW = 0.1216
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454