Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G49760 - ( PAB8 (POLY(A) BINDING PROTEIN 8) RNA binding / translation initiation factor )
88 Proteins interacs with AT1G49760Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G12580![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0186
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G18070![]() ![]() ![]() ![]() | Predictedin vitroAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybridinterologs mappingCo-expression | FSW = 0.0601
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G20960![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0931
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G80070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1019
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT5G60390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0236
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0619
| Unknown | RNA BINDING |
AT5G15680![]() ![]() ![]() ![]() | Predictedinterologs mappinginteraction prediction | FSW = 0.0115
| Unknown | BINDING |
AT5G47010![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT3G53110![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0537
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT3G04820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | PSEUDOURIDINE SYNTHASE |
AT5G19310![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G19840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0601
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G50670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G26600![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0190
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G04610![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0972
| Unknown | FLK (FLOWERING LOCUS KH DOMAIN) RNA BINDING / NUCLEIC ACID BINDING |
AT1G24310![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0226
| Unknown | UNKNOWN PROTEIN |
AT5G35910![]() ![]() ![]() ![]() | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0355
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G37720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1188
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G19120![]() ![]() ![]() ![]() | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0663
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G57150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT5G27720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G48920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G44200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1001
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT5G54910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0896
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G18130![]() ![]() ![]() ![]() | Predictedin vivoin vitro | FSW = 0.0084
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT3G05060![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0514
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT1G17980![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0574
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT3G62310![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1001
| Unknown | RNA HELICASE PUTATIVE |
AT4G08350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT5G62190![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0391
| Unknown | PRH75 ATP-DEPENDENT HELICASE/ DEAD/H-BOX RNA HELICASE BINDING |
AT1G03330![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0603
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT4G18040![]() ![]() ![]() ![]() | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-expression | FSW = 0.0673
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT4G26840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G37560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT3G26618![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0235
| Unknown | ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3) TRANSLATION RELEASE FACTOR |
AT1G01510![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0059
| Unknown | AN (ANGUSTIFOLIA) PROTEIN BINDING |
AT3G29075![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0107
| Unknown | GLYCINE-RICH PROTEIN |
AT1G55460![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0114
| Unknown | KIN17 DNA-BINDING PROTEIN-RELATED |
AT1G78690![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0110
| Unknown | PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN |
AT1G06590![]() ![]() ![]() ![]() | Predictedtwo hybridReconstituted ComplexAffinity Capture-Westernin vitroCo-expression | FSW = 0.0093
| Unknown | UNKNOWN PROTEIN |
AT1G80780![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0410
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G24050![]() ![]() ![]() ![]() | Predictedin vivoin vitro | FSW = 0.0163
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT4G38710![]() ![]() ![]() ![]() | Predictedin vitro | FSW = 0.0110
| Unknown | GLYCINE-RICH PROTEIN |
AT1G04950![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G08880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | H2AXA DNA BINDING |
AT1G14640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0762
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G16350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G16800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0756
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT1G59660 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0394
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT1G59760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G60780![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT1G79150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0662
| Unknown | BINDING |
AT2G18220![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT3G03110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybridColocalizationbiochemicalReconstituted Complex | FSW = 0.0475
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G03340![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0834
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT3G60240![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSReconstituted ComplexReconstituted ComplexAffinity Capture-MSReconstituted ComplexReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-Westernin vitroin vivointeraction prediction | FSW = 0.0721
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G03430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0571
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G12620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G21110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | G10 FAMILY PROTEIN |
AT4G21660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT5G07760 | Predictedinterologs mapping | FSW = 0.0084
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
AT5G22110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G41010![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0181
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G46190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT5G50310![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G51120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-Westerninterologs mappinginterologs mappinginteraction prediction | FSW = 0.0367
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT3G14010![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybridSynthetic Rescueinteraction prediction | FSW = 0.0798
| Unknown | CID4 (CTC-INTERACTING DOMAIN 4) PROTEIN BINDING |
AT3G58560![]() ![]() ![]() ![]() | PredictedSynthetic Lethalitybiochemical | FSW = 0.0226
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G00660![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0793
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G25730![]() ![]() ![]() ![]() | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0361
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G31985![]() ![]() ![]() ![]() | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0112
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G05450![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0353
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G10960![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic Lethalitybiochemical | FSW = 0.0244
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G17760![]() ![]() ![]() ![]() | Predictedinterologs mappinginteraction prediction | FSW = 0.0685
| Unknown | CSTF77 PROTEIN BINDING |
AT5G41880![]() ![]() ![]() ![]() | Predictedtwo hybridCo-expression | FSW = 0.0246
| Unknown | POLA3 DNA PRIMASE |
AT1G64140![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0118
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN SPERM CELL MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS LORICRIN-RELATED (TAIRAT5G645501) HAS 2298 BLAST HITS TO 1429 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 1626 FUNGI - 29 PLANTS - 243 VIRUSES - 9 OTHER EUKARYOTES - 349 (SOURCE NCBI BLINK) |
AT4G19190![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0052
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G66500![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0275
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
AT1G22760![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4817
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G36660![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0459
| Unknown | PAB7 (POLY(A) BINDING PROTEIN 7) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G71770![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0492
| Unknown | PAB5 (POLY(A)-BINDING PROTEIN 5) RNA BINDING / POLY(A) BINDING / TRANSLATION INITIATION FACTOR |
AT2G25440![]() ![]() ![]() ![]() | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.1064
| Unknown | ATRLP20 (RECEPTOR LIKE PROTEIN 20) KINASE/ PROTEIN BINDING |
AT3G06630![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0559
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G42840![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0220
| Unknown | DC1 DOMAIN-CONTAINING PROTEIN |
AT1G49980![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0059
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454