Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G50110 - ( branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) )
28 Proteins interacs with AT1G50110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G19710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3889
| Class C:cytosol | BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) CATALYTIC/ METHIONINE-OXO-ACID TRANSAMINASE |
AT3G62870 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted ComplexReconstituted Complextwo hybridAffinity Capture-MSinterologs mappingsynthetic growth defect | FSW = 0.0242
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G07090 | PredictedSynthetic Rescue | FSW = 0.0329
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT3G26590 | Predictedbiochemical | FSW = 0.0419
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G65780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3203
| Unknown | ATBCAT-5 BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G49680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3025
| Unknown | BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G10070 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0840
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G53870 | Predictedbiochemical | FSW = 0.0296
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G30330 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT4G34430 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0269
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0164
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G72560 | Predictedtwo hybrid | FSW = 0.0541
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G10060 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0746
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT2G38960 | Predictedbiochemical | FSW = 0.0223
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G03950 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | PROTEIN BINDING |
AT3G06470 | Predictedbiochemical | FSW = 0.0396
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G24010 | PredictedPhenotypic Enhancement | FSW = 0.0088
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53880 | PredictedCo-purification | FSW = 0.0286
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G62960 | Predictedtwo hybrid | FSW = 0.1029
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0231
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G19510 | PredictedReconstituted Complex | FSW = 0.0813
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT1G79910 | PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | UNKNOWN PROTEIN |
AT4G21480 | PredictedAffinity Capture-Western | FSW = 0.0664
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G38330 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G54960 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
AT1G50090 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3292
| Unknown | AMINOTRANSFERASE CLASS IV FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454