Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G50500 - ( HIT1 (HEAT-INTOLERANT 1) transporter )
14 Proteins interacs with AT1G50500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G22290 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1260
| Class C:mitochondrion | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0647
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT4G19490 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.4638
| Unknown | PROTEIN BINDING |
AT1G17980 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0235
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G28490 | PredictedAffinity Capture-Western | FSW = 0.1524
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G71270 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2622
| Unknown | POK (POKY POLLEN TUBE) |
AT3G05710 | PredictedAffinity Capture-Western | FSW = 0.0816
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G09080 | PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | BIP3 ATP BINDING |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0833
| Unknown | BIP3 ATP BINDING |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0610
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT2G17980 | PredictedSynthetic Lethality | FSW = 0.0588
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0480
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.0714
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G16090 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | ZINC FINGER PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454