Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51130 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Nse4 (InterProIPR014854) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT3G207601) Has 200 Blast hits to 198 proteins in 89 species Archae - 0 Bacteria - 0 Metazoa - 63 Fungi - 88 Plants - 37 Viruses - 0 Other Eukaryotes - 12 (source NCBI BLink) )

8 Proteins interacs with AT1G51130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41150

Predicted

Synthetic Lethality

FSW = 0.0871

Unknown

 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT3G28030

Predicted

Synthetic Lethality

FSW = 0.1931

Unknown

 UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G15920

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

two hybrid

FSW = 0.3208

Unknown

 STRUCTURAL MAINTENANCE OF CHROMOSOMES (SMC) FAMILY PROTEIN (MSS2)
AT5G61460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2591

Unknown

 MIM (HYPERSENSITIVE TO MMS IRRADIATION AND MMC) ATP BINDING
AT4G25120Predicted

Synthetic Lethality

FSW = 0.0914

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870

Predicted

Synthetic Lethality

FSW = 0.1129

Unknown

 MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G21140

Predicted

Affinity Capture-MS

FSW = 0.2177

Unknown

 EMB1379 (EMBRYO DEFECTIVE 1379)
AT5G26680

Predicted

Synthetic Lethality

FSW = 0.0561

Unknown

 ENDONUCLEASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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