Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51160 - ( synbindin putative )

12 Proteins interacs with AT1G51160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

interaction prediction

FSW = 0.0684

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G02130

Predicted

interologs mapping

interaction prediction

FSW = 0.1259

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT4G04910

Predicted

Synthetic Lethality

FSW = 0.0489

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G30710

Predicted

Synthetic Rescue

FSW = 0.0761

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT1G64330

Predicted

interologs mapping

FSW = 0.1569

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT1G11890

Predicted

interologs mapping

interaction prediction

FSW = 0.1216

Unknown

SEC22 TRANSPORTER
AT5G02280

Predicted

co-fractionation

Co-fractionation

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.5051

Unknown

SYNBINDIN PUTATIVE
AT5G54750

Predicted

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Co-purification

Affinity Capture-MS

interologs mapping

interologs mapping

interaction prediction

FSW = 0.2488

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT5G58030

Predicted

interaction prediction

interologs mapping

two hybrid

FSW = 0.2616

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G05000

Predicted

interologs mapping

interaction prediction

FSW = 0.2450

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT5G52210

Predicted

Synthetic Lethality

FSW = 0.0376

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT1G01960

Predicted

Synthetic Lethality

FSW = 0.0317

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454