Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51680 - ( 4CL1 (4-COUMARATECOA LIGASE 1) 4-coumarate-CoA ligase )

13 Proteins interacs with AT1G51680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

pull down

FSW = 0.0055

Unknown

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT5G04590

Predicted

pull down

FSW = 0.0972

Unknown

SIR SULFITE REDUCTASE (FERREDOXIN)/ SULFITE REDUCTASE
AT1G20510

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6914

Unknown

OPCL1 (OPC-80 COA LIGASE1) 4-COUMARATE-COA LIGASE
AT5G63380

Predicted

Phylogenetic profile method

FSW = 0.8417

Unknown

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT4G05160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7170

Unknown

4-COUMARATE--COA LIGASE PUTATIVE / 4-COUMAROYL-COA SYNTHASE PUTATIVE
AT1G20480

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7744

Unknown

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT5G66760

Predicted

pull down

FSW = 0.0492

Unknown

SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE
AT3G21230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8067

Unknown

4CL5 (4-COUMARATECOA LIGASE 5) 4-COUMARATE-COA LIGASE
AT1G62940

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8067

Unknown

ACOS5 (ACYL-COA SYNTHETASE 5) 4-COUMARATE-COA LIGASE/ LONG-CHAIN-FATTY-ACID-COA LIGASE/ MEDIUM-CHAIN-FATTY-ACID-COA LIGASE
AT3G21240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7446

Unknown

4CL2 (4-COUMARATECOA LIGASE 2) 4-COUMARATE-COA LIGASE
AT5G38120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7446

Unknown

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT1G65060

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8417

Unknown

4CL3 4-COUMARATE-COA LIGASE
AT4G19010

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7744

Unknown

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454