Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51710 - ( UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) calmodulin binding / ubiquitin-specific protease )

115 Proteins interacs with AT1G51710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G41110Experimental

in vitro

FSW = 0.0037

Unknown

CAM2 (CALMODULIN 2) CALCIUM ION BINDING / PROTEIN BINDING
AT1G20010

Predicted

Synthetic Lethality

FSW = 0.0245

Unknown

TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.2071

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G64790Predicted

Phenotypic Enhancement

FSW = 0.0661

Unknown

BINDING
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.1881

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300

Predicted

Synthetic Rescue

FSW = 0.1048

Unknown

PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G59690Predicted

Phenotypic Enhancement

FSW = 0.1112

Unknown

HISTONE H4
AT2G45300

Predicted

Phenotypic Suppression

FSW = 0.0626

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.1522

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G67120Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT5G12250

Predicted

Synthetic Lethality

FSW = 0.0323

Unknown

TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G45000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2532

Unknown

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0331

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G75990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2549

Unknown

26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2609

Unknown

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT5G12480

Predicted

biochemical

FSW = 0.0115

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G04810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3023

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2059

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G53750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2358

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2126

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G47250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Gene neighbors method

Co-expression

FSW = 0.0722

Unknown

PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G42790

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1528

Unknown

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G20140

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2646

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT4G24820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2757

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT1G09100

Predicted

Affinity Capture-MS

FSW = 0.2654

Unknown

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT3G05530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2463

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT4G05190

Predicted

Synthetic Lethality

FSW = 0.0557

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT5G67270

Predicted

Phenotypic Suppression

FSW = 0.1210

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.0308

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.2200

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.1627

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0625

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1459

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G17590

Predicted

Phenotypic Enhancement

FSW = 0.0615

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.1631

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G36170Predicted

Synthetic Rescue

Enriched domain pair

Co-expression

FSW = 0.0054

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.1487

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.0906

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G24500

Predicted

Phenotypic Enhancement

FSW = 0.0529

Unknown

FZF TRANSCRIPTION FACTOR
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.2728

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT5G25150

Predicted

Phenotypic Enhancement

FSW = 0.0423

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT2G06210

Predicted

Phenotypic Enhancement

FSW = 0.0647

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT3G05520

Predicted

Affinity Capture-MS

FSW = 0.0108

Unknown

F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN
AT2G44950

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2237

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.1370

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT2G31970

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1581

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G63960

Predicted

Synthetic Lethality

FSW = 0.0142

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2977

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G54260

Predicted

Phenotypic Enhancement

FSW = 0.1909

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G04020

Predicted

Phenotypic Enhancement

FSW = 0.1403

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G10520

Predicted

Affinity Capture-MS

FSW = 0.1747

Unknown

DNA POLYMERASE LAMBDA (POLL)
AT1G29150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2711

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G32130

Predicted

Phenotypic Enhancement

FSW = 0.0845

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.1697

Unknown

NUCLEOTIDE BINDING
AT1G52740

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2561

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54140

Predicted

Phenotypic Enhancement

FSW = 0.1492

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G54390

Predicted

Phenotypic Enhancement

FSW = 0.1417

Unknown

PHD FINGER PROTEIN-RELATED
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.0263

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.2202

Unknown

SNL5 (SIN3-LIKE 5)
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0311

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.1837

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G63160

Predicted

Phenotypic Enhancement

FSW = 0.1224

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G66740

Predicted

Phenotypic Enhancement

FSW = 0.1688

Unknown

SGA2
AT1G67190

Predicted

Synthetic Lethality

FSW = 0.1231

Unknown

F-BOX FAMILY PROTEIN
AT1G77470

Predicted

Phenotypic Enhancement

FSW = 0.0543

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT1G79730

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1461

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G80410

Predicted

synthetic growth defect

FSW = 0.1808

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2066

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G37840

Predicted

biochemical

FSW = 0.0106

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0727

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G11910

Predicted

Phenotypic Suppression

FSW = 0.0498

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.3613

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G20800

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0332

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G21060

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2074

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1834

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G42660

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

interaction prediction

FSW = 0.2292

Unknown

NUCLEOTIDE BINDING
AT3G45630

Predicted

synthetic growth defect

FSW = 0.0423

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G46960Predicted

Phenotypic Enhancement

FSW = 0.0661

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT4G05320

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0227

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT4G19006

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3076

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G22140

Predicted

Phenotypic Enhancement

FSW = 0.1051

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G27180

Predicted

Synthetic Lethality

FSW = 0.0892

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G29040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2570

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

FSW = 0.3559

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2824

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G13680

Predicted

Phenotypic Enhancement

FSW = 0.1159

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G13780

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1331

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G22840

Predicted

biochemical

FSW = 0.0365

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G23540

Predicted

Synthetic Lethality

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3008

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G26680

Predicted

synthetic growth defect

FSW = 0.1623

Unknown

ENDONUCLEASE PUTATIVE
AT5G27970Predicted

Phenotypic Suppression

FSW = 0.1669

Unknown

BINDING
AT5G41880

Predicted

Phenotypic Enhancement

FSW = 0.0511

Unknown

POLA3 DNA PRIMASE
AT5G43500

Predicted

Phenotypic Enhancement

FSW = 0.1907

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G48640

Predicted

Phenotypic Enhancement

FSW = 0.0941

Unknown

CYCLIN FAMILY PROTEIN
AT5G63610

Predicted

Phenotypic Enhancement

FSW = 0.0694

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63670

Predicted

Phenotypic Suppression

FSW = 0.1463

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G64520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2944

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT2G03430

Predicted

Affinity Capture-MS

FSW = 0.2728

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT2G32730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2581

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.0667

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3041

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G55380

Predicted

Synthetic Rescue

FSW = 0.0914

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT5G10400Predicted

Phenotypic Enhancement

FSW = 0.1250

Unknown

HISTONE H3
AT5G41340

Predicted

Synthetic Rescue

FSW = 0.0331

Unknown

UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Synthetic Rescue

FSW = 0.1101

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G43010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2719

Unknown

RPT4A ATPASE
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1886

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT1G64750

Predicted

Affinity Capture-MS

FSW = 0.3113

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G55255Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1064

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G14400

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1381

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.1984

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G54670

Predicted

interaction prediction

FSW = 0.0371

Unknown

ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR
AT3G21280

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1138

Unknown

UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454