Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51710 - ( UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) calmodulin binding / ubiquitin-specific protease )
115 Proteins interacs with AT1G51710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G41110 | Experimentalin vitro | FSW = 0.0037
| Unknown | CAM2 (CALMODULIN 2) CALCIUM ION BINDING / PROTEIN BINDING |
AT1G20010 | PredictedSynthetic Lethality | FSW = 0.0245
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.2071
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0661
| Unknown | BINDING |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.1881
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedSynthetic Rescue | FSW = 0.1048
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G59690 | PredictedPhenotypic Enhancement | FSW = 0.1112
| Unknown | HISTONE H4 |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0626
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G63110 | PredictedPhenotypic Enhancement | FSW = 0.1522
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G67120 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT5G12250 | PredictedSynthetic Lethality | FSW = 0.0323
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G45000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2532
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2549
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2609
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT5G12480 | Predictedbiochemical | FSW = 0.0115
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G04810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3023
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2059
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2358
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2126
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G47250 | PredictedAffinity Capture-MSAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0722
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1528
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2646
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2757
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedAffinity Capture-MS | FSW = 0.2654
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2463
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.0557
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | PredictedPhenotypic Suppression | FSW = 0.1210
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0308
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.2200
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.1627
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0625
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1459
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G17590 | PredictedPhenotypic Enhancement | FSW = 0.0615
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.1631
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G36170 | PredictedSynthetic RescueEnriched domain pairCo-expression | FSW = 0.0054
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.1487
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.0906
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G24500 | PredictedPhenotypic Enhancement | FSW = 0.0529
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.2728
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G25150 | PredictedPhenotypic Enhancement | FSW = 0.0423
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT2G06210 | PredictedPhenotypic Enhancement | FSW = 0.0647
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT3G05520 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
AT2G44950 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2237
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.1370
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT2G31970 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1581
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G63960 | PredictedSynthetic Lethality | FSW = 0.0142
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2977
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G54260 | PredictedPhenotypic Enhancement | FSW = 0.1909
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G04020 | PredictedPhenotypic Enhancement | FSW = 0.1403
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G10520 | PredictedAffinity Capture-MS | FSW = 0.1747
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2711
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.1697
| Unknown | NUCLEOTIDE BINDING |
AT1G52740 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.2561
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54140 | PredictedPhenotypic Enhancement | FSW = 0.1492
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.1417
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0263
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.2202
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0311
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.1837
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.1224
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.1688
| Unknown | SGA2 |
AT1G67190 | PredictedSynthetic Lethality | FSW = 0.1231
| Unknown | F-BOX FAMILY PROTEIN |
AT1G77470 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT1G79730 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1461
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1808
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2066
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G37840 | Predictedbiochemical | FSW = 0.0106
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0727
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G11910 | PredictedPhenotypic Suppression | FSW = 0.0498
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.3613
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G20800 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0332
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G21060 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2074
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1834
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.2292
| Unknown | NUCLEOTIDE BINDING |
AT3G45630 | Predictedsynthetic growth defect | FSW = 0.0423
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G46960 | PredictedPhenotypic Enhancement | FSW = 0.0661
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT4G05320 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0227
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3076
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.1051
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.0892
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2570
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction prediction | FSW = 0.3559
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2824
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G13680 | PredictedPhenotypic Enhancement | FSW = 0.1159
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G13780 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1331
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G22840 | Predictedbiochemical | FSW = 0.0365
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G23540 | PredictedSynthetic LethalityCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3008
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1623
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27970 | PredictedPhenotypic Suppression | FSW = 0.1669
| Unknown | BINDING |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.0511
| Unknown | POLA3 DNA PRIMASE |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.1907
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G63610 | PredictedPhenotypic Enhancement | FSW = 0.0694
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63670 | PredictedPhenotypic Suppression | FSW = 0.1463
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2944
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G03430 | PredictedAffinity Capture-MS | FSW = 0.2728
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2581
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3041
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G55380 | PredictedSynthetic Rescue | FSW = 0.0914
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.1250
| Unknown | HISTONE H3 |
AT5G41340 | PredictedSynthetic Rescue | FSW = 0.0331
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedSynthetic Rescue | FSW = 0.1101
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G43010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2719
| Unknown | RPT4A ATPASE |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.1886
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.3113
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G55255 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1064
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G14400 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1381
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.1984
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G54670 | Predictedinteraction prediction | FSW = 0.0371
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT3G21280 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1138
| Unknown | UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454