Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G51740 - ( SYP81 (SYNTAXIN OF PLANTS 81) SNAP receptor/ protein binding )
14 Proteins interacs with AT1G51740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47700 | Experimentaltwo hybrid | FSW = 0.0933
| Unknown | MAG2 (MAIGO2) |
AT3G09840 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0205
| Class C:endoplasmic reticulum | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT4G34640 | Predictedtwo hybridinteraction prediction | FSW = 0.0462
| Class C:endoplasmic reticulum | SQS1 (SQUALENE SYNTHASE 1) FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE |
AT1G11890 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0493
| Class C:endoplasmic reticulum | SEC22 TRANSPORTER |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.0362
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G56190 | PredictedAffinity Capture-Western | FSW = 0.0761
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT4G04910 | Predictedinterologs mapping | FSW = 0.0641
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G61210 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0042
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G32900 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0832
| Unknown | ATZW10 |
AT4G34270 | Predictedtwo hybridinteraction prediction | FSW = 0.0495
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT4G02690 | Predictedtwo hybrid | FSW = 0.0588
| Unknown | GLUTAMATE BINDING |
AT2G17980 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complextwo hybridinteraction prediction | FSW = 0.1389
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT4G29720 | Predictedinteraction predictiontwo hybrid | FSW = 0.0482
| Unknown | ATPAO5 (POLYAMINE OXIDASE 5) AMINE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454