Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51965 - ( pentatricopeptide (PPR) repeat-containing protein )

5 Proteins interacs with AT1G51965
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G12580

Predicted

Gene fusion method

FSW = 0.0266

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G04842

Predicted

Gene fusion method

FSW = 0.0645

Unknown

EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT1G27500

Predicted

Gene fusion method

FSW = 0.1233

Unknown

KINESIN LIGHT CHAIN-RELATED
AT3G29340

Predicted

Gene fusion method

FSW = 0.4138

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G32850

Predicted

Gene fusion method

FSW = 0.0568

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454