Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G53710 - ( hydrolase/ protein serine/threonine phosphatase )

26 Proteins interacs with AT1G53710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G56310

Predicted

two hybrid

two hybrid

FSW = 0.0983

Unknown

ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE
AT4G03560

Predicted

Synthetic Rescue

Enriched domain pair

Co-expression

FSW = 0.0460

Unknown

ATTPC1 (TWO-PORE CHANNEL 1) CALCIUM CHANNEL/ VOLTAGE-GATED CALCIUM CHANNEL
AT1G27770

Predicted

Synthetic Lethality

FSW = 0.0765

Unknown

ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT3G55200Predicted

two hybrid

two hybrid

FSW = 0.0823

Unknown

SPLICING FACTOR PUTATIVE
AT5G13300

Predicted

two hybrid

FSW = 0.0343

Unknown

SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING
AT1G07670

Predicted

interologs mapping

FSW = 0.0309

Unknown

CALCIUM-TRANSPORTING ATPASE
AT4G29900

Predicted

Synthetic Lethality

FSW = 0.0826

Unknown

ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT3G61890

Predicted

two hybrid

FSW = 0.0307

Unknown

ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G08380

Predicted

two hybrid

FSW = 0.0666

Unknown

ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT1G10130

Predicted

interologs mapping

FSW = 0.0329

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT1G62430

Predicted

Phenotypic Enhancement

FSW = 0.0356

Unknown

ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE
AT5G20850

Predicted

two hybrid

two hybrid

FSW = 0.0103

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G16590

Predicted

two hybrid

FSW = 0.0826

Unknown

REV7 DNA BINDING
AT2G15230

Predicted

two hybrid

FSW = 0.0444

Unknown

ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT2G47970

Predicted

two hybrid

FSW = 0.0459

Unknown

NPL4 FAMILY PROTEIN
AT3G55220

Predicted

two hybrid

FSW = 0.0539

Unknown

SPLICING FACTOR PUTATIVE
AT3G63000

Predicted

two hybrid

two hybrid

FSW = 0.1147

Unknown

NPL41 (NPL4-LIKE PROTEIN 1)
AT5G09880

Predicted

two hybrid

FSW = 0.0230

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G10810

Predicted

two hybrid

two hybrid

FSW = 0.0307

Unknown

ATER
AT5G14180

Predicted

two hybrid

FSW = 0.0132

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G26850

Predicted

two hybrid

FSW = 0.0275

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CYCLIN-RELATED (TAIRAT2G418301) HAS 199 BLAST HITS TO 197 PROTEINS IN 66 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 113 FUNGI - 19 PLANTS - 59 VIRUSES - 0 OTHER EUKARYOTES - 8 (SOURCE NCBI BLINK)
AT5G41770

Predicted

two hybrid

two hybrid

FSW = 0.0372

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G45190

Predicted

two hybrid

two hybrid

FSW = 0.1590

Unknown

CYCLIN FAMILY PROTEIN
AT5G61980

Predicted

two hybrid

FSW = 0.0522

Unknown

AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING
AT1G16560

Predicted

Synthetic Rescue

interaction prediction

FSW = 0.0430

Unknown

PER1-LIKE FAMILY PROTEIN
AT2G16940

Predicted

two hybrid

FSW = 0.0368

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454