Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G53710 - ( hydrolase/ protein serine/threonine phosphatase )
26 Proteins interacs with AT1G53710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G56310 | Predictedtwo hybridtwo hybrid | FSW = 0.0983
| Unknown | ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE |
AT4G03560 | PredictedSynthetic RescueEnriched domain pairCo-expression | FSW = 0.0460
| Unknown | ATTPC1 (TWO-PORE CHANNEL 1) CALCIUM CHANNEL/ VOLTAGE-GATED CALCIUM CHANNEL |
AT1G27770 | PredictedSynthetic Lethality | FSW = 0.0765
| Unknown | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT3G55200 | Predictedtwo hybridtwo hybrid | FSW = 0.0823
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0343
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT1G07670 | Predictedinterologs mapping | FSW = 0.0309
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT4G29900 | PredictedSynthetic Lethality | FSW = 0.0826
| Unknown | ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT3G61890 | Predictedtwo hybrid | FSW = 0.0307
| Unknown | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0666
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0329
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G62430 | PredictedPhenotypic Enhancement | FSW = 0.0356
| Unknown | ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
AT5G20850 | Predictedtwo hybridtwo hybrid | FSW = 0.0103
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0826
| Unknown | REV7 DNA BINDING |
AT2G15230 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G47970 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | NPL4 FAMILY PROTEIN |
AT3G55220 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G63000 | Predictedtwo hybridtwo hybrid | FSW = 0.1147
| Unknown | NPL41 (NPL4-LIKE PROTEIN 1) |
AT5G09880 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G10810 | Predictedtwo hybridtwo hybrid | FSW = 0.0307
| Unknown | ATER |
AT5G14180 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G26850 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CYCLIN-RELATED (TAIRAT2G418301) HAS 199 BLAST HITS TO 197 PROTEINS IN 66 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 113 FUNGI - 19 PLANTS - 59 VIRUSES - 0 OTHER EUKARYOTES - 8 (SOURCE NCBI BLINK) |
AT5G41770 | Predictedtwo hybridtwo hybrid | FSW = 0.0372
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G45190 | Predictedtwo hybridtwo hybrid | FSW = 0.1590
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G61980 | Predictedtwo hybrid | FSW = 0.0522
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT1G16560 | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0430
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT2G16940 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454