Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G53720 - ( CYP59 (CYCLOPHILIN 59) RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase )
28 Proteins interacs with AT1G53720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G54770 | Experimentalpull down | FSW = 0.0115
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT4G35800 | Experimentalpull downtwo hybridReconstituted ComplexAffinity Capture-Westernaffinity technologyin vitrocoimmunoprecipitation | FSW = 0.0035
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G55310 | Experimentalpull downconfocal microscopyReconstituted Complexin vitro | FSW = 0.3799
| Unknown | SR33 RNA BINDING / PROTEIN BINDING |
AT1G79530 | Experimental | FSW = 0.0161
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT2G32950 | Experimentalpull down | FSW = 0.0221
| Unknown | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G64200 | ExperimentalReconstituted Complexin vitro | FSW = 0.1524
| Unknown | ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G18810 | ExperimentalReconstituted Complexin vitro | FSW = 0.4060
| Unknown | SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G55460 | ExperimentalReconstituted Complexin vitro | FSW = 0.4274
| Unknown | SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G13570 | ExperimentalReconstituted Complexin vitro | FSW = 0.4662
| Unknown | SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G09140 | Experimentalconfocal microscopypull downReconstituted Complexin vitro | FSW = 0.2286
| Unknown | SF2/ASF-LIKE SPLICING MODULATOR (SRP30) |
AT1G02840 | ExperimentalReconstituted Complexin vitro | FSW = 0.1895
| Unknown | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G23860 | ExperimentalReconstituted Complexin vitro | FSW = 0.3642
| Unknown | RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING |
AT2G37340 | ExperimentalReconstituted Complexin vitro | FSW = 0.4103
| Unknown | RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G61860 | Experimentalpull downReconstituted Complexin vitro | FSW = 0.2722
| Unknown | RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G25500 | Experimentalpull downReconstituted Complexin vitro | FSW = 0.1607
| Unknown | ATRSP35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G02340 | Experimentalpull down | FSW = 0.0625
| Unknown | HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G62190 | Experimentalconfocal microscopy | FSW = 0.0573
| Unknown | PRH75 ATP-DEPENDENT HELICASE/ DEAD/H-BOX RNA HELICASE BINDING |
AT2G20490 | Experimentalconfocal microscopy | FSW = 0.0323
| Unknown | NOP10 RNA BINDING |
AT5G53530 | Experimentalpull down | FSW = 0.0315
| Unknown | VPS26A (VACUOLAR PROTEIN SORTING 26A) |
AT2G28910 | Predictedtwo hybridtwo hybrid | FSW = 0.0433
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0039
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G25020 | Predictedtwo hybrid | FSW = 0.0595
| Unknown | KOW DOMAIN-CONTAINING PROTEIN / D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT5G37370 | Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | ATSRL1 BINDING |
AT4G19190 | Predictedtwo hybridtwo hybrid | FSW = 0.0795
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT5G05470 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0516
| Unknown | EIF2 ALPHA RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G21920 | Predictedtwo hybrid | FSW = 0.0645
| Unknown | MORN (MEMBRANE OCCUPATION AND RECOGNITION NEXUS) REPEAT-CONTAINING PROTEIN /PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE-RELATED |
AT5G18475 | PredictedGene fusion method | FSW = 0.0750
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G03840 | PredictedGene fusion method | FSW = 0.0450
| Unknown | MGP (MAGPIE) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454