Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G53780 - ( ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase )
24 Proteins interacs with AT1G53780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.2595
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G15180 | Predictedtwo hybridtwo hybridin vitroAffinity Capture-MS | FSW = 0.2165
| Unknown | PROTEASOME-RELATED |
AT4G12610 | Predictedin vivoAffinity Capture-MS | FSW = 0.0409
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G45000 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3294
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G53750 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2765
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedPhylogenetic profile method | FSW = 0.1786
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20140 | PredictedPhylogenetic profile method | FSW = 0.3234
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.3093
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedPhylogenetic profile method | FSW = 0.3114
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G10220 | Predictedtwo hybrid | FSW = 0.0756
| Unknown | TUBULIN FOLDING COFACTOR B |
AT3G05530 | PredictedPhylogenetic profile method | FSW = 0.3964
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G13445 | Predictedin vivo | FSW = 0.0216
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G61420 | Predictedin vivoin vitro | FSW = 0.0368
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S KELCH RELATED (INTERPROIPR013089) BSD (INTERPROIPR005607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR-RELATED (TAIRAT1G557501) HAS 247 BLAST HITS TO 247 PROTEINS IN 115 SPECIES ARCHAE - 1 BACTERIA - 0 METAZOA - 116 FUNGI - 84 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G58290 | PredictedAffinity Capture-MSin vivoAffinity Capture-MSPhylogenetic profile method | FSW = 0.2775
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | Predictedtwo hybrid | FSW = 0.1120
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT2G30350 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | ENDO/EXCINUCLEASE AMINO TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G22480 | Predictedtwo hybrid | FSW = 0.0292
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT4G29040 | Predictedin vitroAffinity Capture-MSPhylogenetic profile method | FSW = 0.4512
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0890
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G28470 | Predictedin vitroAffinity Capture-MS | FSW = 0.2424
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
AT5G20000 | PredictedPhylogenetic profile method | FSW = 0.3793
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT5G43010 | PredictedPhylogenetic profile method | FSW = 0.3242
| Unknown | RPT4A ATPASE |
AT1G12970 | PredictedGene fusion method | FSW = 0.0775
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G05320 | PredictedGene fusion method | FSW = 0.0379
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454