Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G53850 - ( PAE1 endopeptidase/ peptidase/ threonine-type endopeptidase )
34 Proteins interacs with AT1G53850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.2309
| Class D:cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G46090 | Experimental | FSW = 0.0092
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2824
| Class C:vacuoleplasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G21720 | PredictedAffinity Capture-MS | FSW = 0.5478
| Class C:vacuole | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5342
| Class C:vacuole | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G66140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4085
| Class C:vacuole | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6039
| Class C:vacuole | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.2219
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.5568
| Class C:vacuole | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2273
| Class C:vacuole | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5757
| Class C:vacuole | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5411
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G42500 | PredictedAffinity Capture-MS | FSW = 0.3089
| Class C:plasma membrane | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G43810 | PredictedReconstituted Complex | FSW = 0.0074
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G47250 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5045
| Class C:plasma membrane | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.2642
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G66410 | PredictedReconstituted Complex | FSW = 0.0048
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT2G18040 | PredictedAffinity Capture-MS | FSW = 0.0163
| Class C:plasma membrane | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4653
| Class C:plasma membrane | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT3G14290 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4457
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G13060 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4784
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | PredictedAffinity Capture-MSAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5287
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G77440 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3419
| Unknown | PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.4091
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G36200 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G56450 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5791
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3508
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT3G13330 | PredictedAffinity Capture-MS | FSW = 0.2759
| Unknown | BINDING |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | ATATG18A |
AT4G00660 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G40580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5687
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G45810 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G27430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.5577
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454