Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G54100 - ( ALDH7B4 (Aldehyde Dehydrogenase 7B4) 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase )

11 Proteins interacs with AT1G54100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G44170

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0667

Unknown

ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT3G48000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5832

Unknown

ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ATP BINDING / ALDEHYDE DEHYDROGENASE (NAD)
AT3G48170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1855

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G79440

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

ALDH5F1 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ NAD OR NADH BINDING / SUCCINATE-SEMIALDEHYDE DEHYDROGENASE
AT3G66658

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5046

Unknown

ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G74920

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7613

Unknown

ALDH10A8 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G23800

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5510

Unknown

ALDH2B7 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT5G56580

Predicted

two hybrid

FSW = 0.0301

Unknown

MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE
AT3G24503

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7613

Unknown

ALDH2C4 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)/ CONIFERYL-ALDEHYDE DEHYDROGENASE
AT2G24270

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7794

Unknown

ALDH11A3 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)
AT5G57740

Predicted

Gene fusion method

FSW = 0.0618

Unknown

XBAT32 PROTEIN BINDING / ZINC ION BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454