Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G54370 - ( NHX5 sodium ion transmembrane transporter/ sodiumhydrogen antiporter )
19 Proteins interacs with AT1G54370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G40670 | Predictedtwo hybridinteraction prediction | FSW = 0.0345
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT1G52600 | Predictedtwo hybridinteraction prediction | FSW = 0.0711
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0155
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G22290 | PredictedSynthetic Rescue | FSW = 0.0220
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.0257
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G67190 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0733
| Unknown | F-BOX FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.0895
| Unknown | NUCLEOTIDE BINDING |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0504
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0265
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10260 | PredictedSynthetic Rescue | FSW = 0.0341
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.0678
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0528
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G41610 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0824
| Unknown | ATCHX18 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.0325
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G57170 | Predictedtwo hybridinteraction prediction | FSW = 0.0368
| Unknown | N-ACETYLGLUCOSAMINYL TRANSFERASE COMPONENT FAMILY PROTEIN / GPI1 FAMILY PROTEIN |
AT4G34100 | Predictedtwo hybrid | FSW = 0.0824
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G05580 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0909
| Unknown | ATCHX23 (CATION/H+ EXCHANGER 23) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.0577
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G61150 | Predictedtwo hybridinteraction prediction | FSW = 0.0178
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454