Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G54390 - ( PHD finger protein-related )
62 Proteins interacs with AT1G54390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-Western | FSW = 0.0341
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.0394
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G10050 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT3G02520 | PredictedSynthetic Lethality | FSW = 0.0908
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G35800 | Predictedtwo hybrid | FSW = 0.0292
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G58230 | PredictedSynthetic Lethality | FSW = 0.0223
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G38480 | PredictedSynthetic Lethality | FSW = 0.0672
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48930 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12110 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0324
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0692
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT5G52240 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | MSBP1 (MEMBRANE STEROID BINDING PROTEIN 1) STEROID BINDING |
AT5G12480 | Predictedbiochemical | FSW = 0.0203
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G02230 | Predictedtwo hybrid | FSW = 0.0041
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT1G16970 | PredictedSynthetic LethalityPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0487
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G08130 | PredictedPhenotypic Enhancement | FSW = 0.0848
| Unknown | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT2G45490 | Predictedbiochemical | FSW = 0.0277
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G67270 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G54610 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0569
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.1039
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.1340
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G02740 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.1566
| Unknown | CHROMATIN BINDING |
AT3G06720 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G47210 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1670
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.1364
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G18620 | PredictedPhenotypic Suppression | FSW = 0.0601
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT2G44950 | PredictedSynthetic Lethality | FSW = 0.0836
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G31970 | PredictedPhenotypic Enhancement | FSW = 0.0994
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G54260 | PredictedPhenotypic Enhancement | FSW = 0.1449
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G14800 | Predictedtwo hybrid | FSW = 0.0474
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | H2AXA DNA BINDING |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.1417
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1884
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G37840 | Predictedbiochemical | FSW = 0.0264
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0251
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT5G09740 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2283
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G22840 | Predictedbiochemical | FSW = 0.0145
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G45600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1706
| Unknown | GAS41 PROTEIN BINDING |
AT5G46030 | PredictedPhenotypic Enhancement | FSW = 0.0900
| Unknown | UNKNOWN PROTEIN |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.1234
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.1569
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0860
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44580 | PredictedPhenotypic Enhancement | FSW = 0.0669
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G22590 | PredictedSynthetic Lethality | FSW = 0.1228
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G36080 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1274
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G55310 | PredictedPhenotypic Enhancement | FSW = 0.0378
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G59440 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT5G61150 | PredictedSynthetic Lethality | FSW = 0.1028
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT2G18000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1901
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G17930 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1521
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G55300 | PredictedPhenotypic Enhancement | FSW = 0.0464
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.0937
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G55255 | PredictedSynthetic Lethality | FSW = 0.0498
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0585
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0281
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G14360 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | UTR3 (UDP-GALACTOSE TRANSPORTER 3) PYRIMIDINE NUCLEOTIDE SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G26850 | Predictedtwo hybrid | FSW = 0.0144
| Unknown | VTC2 (VITAMIN C DEFECTIVE 2) GDP-D-GLUCOSE PHOSPHORYLASE/ GDP-GALACTOSEGLUCOSE-1-PHOSPHATE GUANYLTRANSFERASE/ GDP-GALACTOSEMANNOSE-1-PHOSPHATE GUANYLTRANSFERASE/ GDP-GALACTOSEMYOINOSITOL-1-PHOSPHATE GUANYLTRANSFERASE/ GALACTOSE-1-PHOSPHATE GUANYLYLTRA |
AT4G31985 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454