Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55130 - ( endomembrane protein 70 putative )
20 Proteins interacs with AT1G55130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10840 | PredictedPhylogenetic profile method | FSW = 0.5000
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT3G13772 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5000
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT5G25100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5000
| Class C:golgi | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT5G37310 | PredictedPhylogenetic profile method | FSW = 0.3889
| Class C:golgi | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLANT-TYPE CELL WALL EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ENDOMEMBRANE PROTEIN 70 PUTATIVE (TAIRAT1G146701) HAS 1019 BLAST HITS TO 986 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 444 FUNGI - 148 PLANTS - 242 VIRUSES - 0 OTHER EUKARYOTES - 185 (SOURCE NCBI BLINK) |
AT5G35160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3043
| Class C:golgi | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK) |
AT1G30000 | Predictedtwo hybridinteraction prediction | FSW = 0.0435
| Class C:golgi | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0503
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G65920 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / ZINC FINGER PROTEIN-RELATED |
AT5G46860 | Predictedtwo hybridinteraction prediction | FSW = 0.0582
| Unknown | VAM3 SNAP RECEPTOR |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G15080 | Predictedtwo hybridinteraction prediction | FSW = 0.1250
| Unknown | LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0434
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G27980 | Predictedinteraction prediction | FSW = 0.1219
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0268
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0252
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT4G26550 | Predictedtwo hybridinteraction prediction | FSW = 0.2500
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
AT5G60020 | Predictedtwo hybrid | FSW = 0.0803
| Unknown | LAC17 (LACCASE 17) LACCASE |
AT1G32270 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G24170 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5000
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454