Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55310 - ( SR33 RNA binding / protein binding )

16 Proteins interacs with AT1G55310
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16610

Experimental

pull down

two hybrid

Reconstituted Complex

coimmunoprecipitation

FSW = 0.2186

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR45 RNA BINDING / PROTEIN BINDING
AT3G50670

Experimental

pull down

two hybrid

Reconstituted Complex

coimmunoprecipitation

FSW = 0.0600

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G18810

Experimental

Reconstituted Complex

in vitro

FSW = 0.5934

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

Reconstituted Complex

in vitro

FSW = 0.6173

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

Reconstituted Complex

in vitro

FSW = 0.6734

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G09140

Experimental

FSW = 0.4045

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SF2/ASF-LIKE SPLICING MODULATOR (SRP30)
AT2G43370

Experimental

interaction detection method

FSW = 0.5961

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT1G02840

Experimental

confocal microscopy

FSW = 0.4138

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37340

Experimental

two hybrid

FSW = 0.6648

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G64200

Experimental

Reconstituted Complex

in vitro

FSW = 0.4154

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

 ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G61860

Experimental

confocal microscopy

FSW = 0.5664

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

 RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G60020

Experimental

pull down

FSW = 0.0750

Class A:

nucleus

Class B:

plasma membrane

 ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G19350

Experimental

interaction detection method

FSW = 0.0561

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT1G53720

Experimental

pull down

confocal microscopy

Reconstituted Complex

in vitro

FSW = 0.3799

Unknown

 CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G24740

Experimental

protein kinase assay

pull down

Reconstituted Complex

FSW = 0.0924

Unknown

 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT1G09760

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.0668

Class C:

nucleus

 U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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