Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55690 - ( SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )
51 Proteins interacs with AT1G55690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36530 | Predictedtwo hybrid | FSW = 0.0258
| Class C:plasma membranecytosol | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT5G56160 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0741
| Class C:plasma membranecytosol | TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2510
| Class C:plasma membranecytosol | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT3G49910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1369
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.1782
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.1218
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G28715 | PredictedReconstituted ComplexAffinity Capture-WesternCo-purificationAffinity Capture-WesternReconstituted Complex | FSW = 0.1023
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.1836
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0093
| Class C:plasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G01620 | Predictedtwo hybrid | FSW = 0.0418
| Class C:plasma membrane | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT3G61430 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.1956
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.2577
| Class C:plasma membrane | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0781
| Class C:cytosol | A37 PROTEIN HETERODIMERIZATION |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0495
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G28390 | Predictedinterologs mapping | FSW = 0.0205
| Unknown | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT2G20800 | Predictedtwo hybrid | FSW = 0.0226
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT4G29210 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.1635
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT3G55400 | Predictedtwo hybrid | FSW = 0.0948
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.1506
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G23940 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | DEHYDRATASE FAMILY |
AT5G53480 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.1243
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G18600 | PredictedReconstituted Complex | FSW = 0.0632
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G21540 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1067
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.0450
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G47510 | Predictedtwo hybrid | FSW = 0.0382
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G47990 | PredictedReconstituted Complex | FSW = 0.0131
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT5G17790 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | VAR3 (VARIEGATED 3) BINDING / ZINC ION BINDING |
AT1G01960 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G20696 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.1119
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1643
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.0150
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.2577
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT3G62770 | PredictedSynthetic Lethality | FSW = 0.0252
| Unknown | ATATG18A |
AT4G26510 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0796
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.1764
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G43340 | PredictedReconstituted ComplexCo-purificationAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.2250
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1340
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0804
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT1G59580 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G16740 | PredictedAffinity Capture-Western | FSW = 0.1163
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G46280 | Predictedtwo hybridtwo hybrid | FSW = 0.0449
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G03080 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1434
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G09330 | Predictedtwo hybrid | FSW = 0.0367
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G13330 | Predictedtwo hybrid | FSW = 0.1607
| Unknown | BINDING |
AT3G45630 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Western | FSW = 0.0718
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G07950 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.3355
| Unknown | UNKNOWN PROTEIN |
AT5G13010 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G49930 | PredictedAffinity Capture-Western | FSW = 0.2308
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454