Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55860 - ( UPL1 (UBIQUITIN-PROTEIN LIGASE 1) ubiquitin-protein ligase )
30 Proteins interacs with AT1G55860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G54770 | Predictedsynthetic growth defect | FSW = 0.0389
| Class C:mitochondrion | THI1 PROTEIN HOMODIMERIZATION |
AT3G04920 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT2G47610 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT3G09790 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | UBQ8 PROTEIN BINDING |
AT1G72370 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0556
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G04840 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT4G33500 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | PROTEIN PHOSPHATASE 2C-RELATED / PP2C-RELATED |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G17440 | PredictedSynthetic Rescue | FSW = 0.0365
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT2G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0183
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G25530 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | GLYR1 (GLYOXYLATE REDUCTASE 1) 3-HYDROXYBUTYRATE DEHYDROGENASE/ PHOSPHOGLUCONATE DEHYDROGENASE (DECARBOXYLATING) |
AT5G65110 | Predictedtwo hybrid | FSW = 0.0242
| Unknown | ACX2 (ACYL-COA OXIDASE 2) ACYL-COA OXIDASE |
AT4G16830 | Predictedinterologs mappinginterologs mapping | FSW = 0.0138
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G54280 | PredictedSynthetic Rescue | FSW = 0.0216
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G28060 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT2G36170 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0185
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G26840 | Predictedinterologs mapping | FSW = 0.0440
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT1G61580 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G80670 | Predictedsynthetic growth defect | FSW = 0.0407
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT3G11450 | PredictedAffinity Capture-MSSynthetic Rescue | FSW = 0.0271
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT4G05320 | PredictedAffinity Capture-Western | FSW = 0.0123
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT3G12340 | Predictedinterologs mapping | FSW = 0.0529
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G11660 | PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G54770 | Predictedtwo hybrid | FSW = 0.0606
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G304952) HAS 216 BLAST HITS TO 216 PROTEINS IN 112 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 26 (SOURCE NCBI BLINK) |
AT4G17510 | Predictedtwo hybrid | FSW = 0.0677
| Unknown | UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE |
AT5G62700 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G08420 | Predictedtwo hybridinteraction prediction | FSW = 0.0281
| Unknown | RNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454