Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55890 - ( pentatricopeptide (PPR) repeat-containing protein )

11 Proteins interacs with AT1G55890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27680

Predicted

Gene fusion method

FSW = 0.0800

Class C:

mitochondrion

MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE
AT2G46800

Predicted

Gene fusion method

FSW = 0.1025

Unknown

ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT2G29650

Predicted

Gene fusion method

FSW = 0.1931

Unknown

PHT41 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC DIPHOSPHATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ ORGANIC ANION TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G48230

Predicted

Gene fusion method

FSW = 0.0863

Unknown

ACAT2 (ACETOACETYL-COA THIOLASE 2) ACETYL-COA C-ACETYLTRANSFERASE/ CATALYTIC
AT3G05200

Predicted

Gene fusion method

FSW = 0.2346

Unknown

ATL6 PROTEIN BINDING / ZINC ION BINDING
AT1G73690

Predicted

Gene fusion method

FSW = 0.0345

Unknown

CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G45240

Predicted

Gene fusion method

FSW = 0.0410

Unknown

MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT3G14580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0937

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G76700

Predicted

Gene fusion method

FSW = 0.1262

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G30090

Predicted

Gene fusion method

FSW = 0.0697

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT5G60090

Predicted

Gene fusion method

FSW = 0.2346

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454