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AT1G56070 - ( LOS1 copper ion binding / translation elongation factor/ translation factor nucleic acid binding )

66 Proteins interacs with AT1G56070

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G25520	Predicted two hybrid	FSW = 0.0170	Class C: vacuole plasma membrane nucleus	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.0244	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT3G02090	Predicted Affinity Capture-MS	FSW = 0.0339	Class C: vacuole nucleus	MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT1G21720	Predicted two hybrid two hybrid Gene neighbors method Co-expression	FSW = 0.0205	Class C: vacuole	PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G30970	Predicted Affinity Capture-MS	FSW = 0.0089	Class C: vacuole	ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT1G18070	Predicted two hybrid Enriched domain pair Co-expression	FSW = 0.0105	Class C: vacuole	EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT4G17140	Predicted Affinity Capture-MS	FSW = 0.0271	Class C: vacuole	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK)
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.0421	Class C: plasma membrane nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G39740	Predicted two hybrid two hybrid	FSW = 0.0193	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G33370	Predicted Affinity Capture-MS	FSW = 0.0267	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT1G57720	Predicted Affinity Capture-MS	FSW = 0.0493	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G06220	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.0325	Class C: plasma membrane	MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT1G65040	Predicted Affinity Capture-MS	FSW = 0.0161	Class C: plasma membrane	PROTEIN BINDING / ZINC ION BINDING
AT5G67630	Predicted Affinity Capture-MS	FSW = 0.0490	Class C: nucleus	DNA HELICASE PUTATIVE
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0202	Class C: nucleus	HISTONE H4
AT1G76300	Predicted two hybrid two hybrid	FSW = 0.0026	Class C: nucleus	SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G08180	Predicted two hybrid two hybrid	FSW = 0.0125	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G20140	Predicted Affinity Capture-Western	FSW = 0.0079	Class C: nucleus	ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G54610	Predicted Affinity Capture-MS	FSW = 0.0127	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT2G28910	Predicted two hybrid two hybrid	FSW = 0.0198	Class C: nucleus	CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0139	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G18270	Predicted Affinity Capture-MS	FSW = 0.0563	Class C: nucleus	KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN
AT5G25230	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.0468	Class C: nucleus	ELONGATION FACTOR TU FAMILY PROTEIN
AT3G19210	Predicted two hybrid	FSW = 0.0201	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G34390	Predicted two hybrid	FSW = 0.0075	Class C: nucleus	XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT3G07100	Predicted two hybrid two hybrid	FSW = 0.0063	Unknown	PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G36880	Predicted Affinity Capture-MS	FSW = 0.0481	Unknown	ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT2G45300	Predicted Affinity Capture-MS	FSW = 0.0440	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G53460	Predicted Affinity Capture-MS	FSW = 0.0206	Unknown	GLT1 GLUTAMATE SYNTHASE (NADH)
AT1G03475	Predicted Affinity Capture-MS	FSW = 0.0451	Unknown	LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE
AT5G13120	Predicted two hybrid	FSW = 0.0116	Unknown	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G10050	Predicted Affinity Capture-MS	FSW = 0.1082	Unknown	OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT3G12050	Predicted Affinity Capture-MS	FSW = 0.0125	Unknown	AHA1 DOMAIN-CONTAINING PROTEIN
AT1G44790	Predicted two hybrid two hybrid	FSW = 0.0396	Unknown	CHAC-LIKE FAMILY PROTEIN
AT5G26220	Predicted two hybrid	FSW = 0.0312	Unknown	CHAC-LIKE FAMILY PROTEIN
AT2G31970	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.1112	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT5G14800	Predicted Affinity Capture-MS	FSW = 0.0177	Unknown	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT5G41150	Predicted Affinity Capture-MS	FSW = 0.0169	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT4G21710	Predicted Affinity Capture-MS	FSW = 0.0227	Unknown	NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G26840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0237	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G77440	Predicted two hybrid	FSW = 0.0271	Unknown	PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G20850	Predicted Affinity Capture-MS	FSW = 0.0349	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT4G17460	Predicted two hybrid	FSW = 0.0146	Unknown	HAT1 DNA BINDING / TRANSCRIPTION FACTOR
AT3G52560	Predicted two hybrid	FSW = 0.0132	Unknown	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G22840	Predicted two hybrid	FSW = 0.0207	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G18465	Predicted two hybrid	FSW = 0.0093	Unknown	RNA HELICASE PUTATIVE
AT1G14300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0258	Unknown	BINDING
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0290	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G27170	Predicted Affinity Capture-MS	FSW = 0.0170	Unknown	TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.1153	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0579	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G59630	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0536	Unknown	DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN
AT4G31790	Predicted Affinity Capture-MS	FSW = 0.0308	Unknown	DIPHTHINE SYNTHASE PUTATIVE (DPH5)
AT4G38630	Predicted Affinity Capture-MS	FSW = 0.0391	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G42190	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0075	Unknown	ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G62030	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0392	Unknown	DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN
AT5G13520	Predicted Affinity Capture-MS	FSW = 0.0308	Unknown	PEPTIDASE M1 FAMILY PROTEIN
AT2G15910	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0196	Unknown	CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT3G20790	Predicted Affinity Capture-MS	FSW = 0.0148	Unknown	OXIDOREDUCTASE FAMILY PROTEIN
AT1G02690	Predicted Affinity Capture-MS	FSW = 0.0214	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT2G36060	Predicted two hybrid	FSW = 0.0125	Unknown	UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN
AT3G44850	Predicted two hybrid	FSW = 0.0392	Unknown	PROTEIN KINASE-RELATED
AT5G64550	Predicted two hybrid	FSW = 0.0177	Unknown	LORICRIN-RELATED
AT5G05010	Predicted two hybrid interaction prediction	FSW = 0.0093	Unknown	CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED
AT1G04170	Predicted Enriched domain pair Gene neighbors method Co-expression	FSW = 0.0090	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G56070 - ( LOS1 copper ion binding / translation elongation factor/ translation factor nucleic acid binding )

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Fasta sequences:

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FSW

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