Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G56090 - ( tetratricopeptide repeat (TPR)-containing protein )

16 Proteins interacs with AT1G56090
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0151

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0198

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0571

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G19450

Predicted

interologs mapping

FSW = 0.0726

Unknown

CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G27720

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G02730

Predicted

Affinity Capture-MS

FSW = 0.0165

Unknown

ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE
AT1G25155Predicted

synthetic growth defect

FSW = 0.0412

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G70290

Predicted

Affinity Capture-MS

FSW = 0.0442

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G46070

Predicted

Affinity Capture-Western

FSW = 0.0376

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G24010

Predicted

synthetic growth defect

FSW = 0.0478

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.0455

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT5G17440

Predicted

interologs mapping

FSW = 0.2273

Unknown

LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN
AT5G26250

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

two hybrid

Reconstituted Complex

Affinity Capture-MS

Co-crystal Structure

FSW = 0.0391

Unknown

SUGAR TRANSPORTER PUTATIVE
AT2G27170

Predicted

interologs mapping

FSW = 0.0575

Unknown

TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G01390

Predicted

Affinity Capture-MS

FSW = 0.0165

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454