Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G56170 - ( NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA binding / transcription activator/ transcription factor )
18 Proteins interacs with AT1G56170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15840 | Experimentaltwo hybrid | FSW = 0.0496
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G14540 | Experimentaltwo hybrid | FSW = 0.2778
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR |
AT1G28050 | Experimentaltwo hybrid | FSW = 0.0963
| Class D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
AT3G10800 | Experimentalprotein complementation assay | FSW = 0.1341
| Unknown | BZIP28 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G09810 | Predictedtwo hybrid | FSW = 0.0711
| Class C:nucleus | ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G34720 | PredictedReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complexinterologs mappinginteraction prediction | FSW = 0.1557
| Class C:nucleus | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT5G47640 | PredictedAffinity Capture-MSReconstituted ComplexReconstituted ComplexAffinity Capture-MStwo hybrid | FSW = 0.2518
| Class C:nucleus | NF-YB2 (NUCLEAR FACTOR Y SUBUNIT B2) TRANSCRIPTION FACTOR |
AT3G12110 | Predictedtwo hybrid | FSW = 0.0424
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G43810 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0074
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT2G20560 | Predictedtwo hybridtwo hybrid | FSW = 0.0224
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT3G52560 | Predictedtwo hybridtwo hybrid | FSW = 0.0201
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G04460 | Predictedtwo hybridtwo hybrid | FSW = 0.0476
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT5G06150 | Predictedtwo hybridtwo hybrid | FSW = 0.0065
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0203
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G26450 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0109
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0578
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G18290 | Predictedtwo hybrid | FSW = 0.0431
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0186
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454