Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G56190 - ( phosphoglycerate kinase putative )
30 Proteins interacs with AT1G56190| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G12780
   | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3492
| Class C:plastidmitochondrion | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
| AT1G74260
| Predictedtwo hybrid | FSW = 0.2048
| Class C:plastidmitochondrion | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
| AT3G13490
| Predictedpull down | FSW = 0.0661
| Class C:plastidmitochondrion | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G14810
| Predictedblue native page | FSW = 0.0623
| Class C:plastidmitochondrion | SEMIALDEHYDE DEHYDROGENASE FAMILY PROTEIN |
| AT1G79550
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0914
| Class C:plastid | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
| AT2G04270
| Predictedpull down | FSW = 0.1258
| Class C:plastid | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
| AT3G17170
| Predictedpull down | FSW = 0.0631
| Class C:plastid | RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G03710
| Predictedpull down | FSW = 0.0842
| Class C:plastid | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| AT3G44890
| Predictedpull down | FSW = 0.1323
| Class C:plastid | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G06290
| Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0111
| Class C:plastid | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
| AT2G37690
| Predictedtwo hybrid | FSW = 0.0677
| Class C:plastid | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
| ATCG00330 | Predictedpull down | FSW = 0.0167
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S14 |
| AT4G37910
| Predictedpull down | FSW = 0.0486
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT2G36530
| Predictedpull down | FSW = 0.0925
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT2G06510
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0165
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT1G75950
| Predictedtwo hybrid | FSW = 0.0041
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G23630
| PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
| AT1G79530
| Predictedin vitroin vivoGene neighbors method | FSW = 0.0538
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT1G62020
| PredictedAffinity Capture-MS | FSW = 0.0416
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
| AT1G05500
| PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | NTMC2T21 |
| AT1G79920
| Predictedin vitro | FSW = 0.0147
| Unknown | ATP BINDING |
| AT4G26840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0312
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT5G13750
| Predictedtwo hybrid | FSW = 0.0566
| Unknown | ZIFL1 (ZINC INDUCED FACILITATOR-LIKE 1) TETRACYCLINEHYDROGEN ANTIPORTER |
| AT5G21140
| Predictedtwo hybrid | FSW = 0.0290
| Unknown | EMB1379 (EMBRYO DEFECTIVE 1379) |
| AT5G48120
| PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | BINDING |
| AT5G03220
| PredictedAffinity Capture-MS | FSW = 0.0522
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
| AT3G05670
| PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | PHD FINGER FAMILY PROTEIN |
| AT2G22040
| PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G52360
| PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
| AT1G29150
| PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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