Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G56450 - ( PBG1 peptidase/ threonine-type endopeptidase )

39 Proteins interacs with AT1G56450
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25490

Experimental

biochemical

FSW = 0.1846

Unknown

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G21720

Predicted

Co-crystal Structure

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5036

Unknown

PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G51260

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5186

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22630

Predicted

Phenotypic Enhancement

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

two hybrid

Co-expression

FSW = 0.3364

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G53850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5791

Unknown

PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5013

Unknown

PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G35590

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5119

Unknown

PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22110

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1832

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

two hybrid

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

interaction prediction

FSW = 0.2727

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300

Predicted

Co-crystal Structure

Co-crystal Structure

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.4986

Unknown

PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G60820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.4737

Unknown

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G06380

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0244

Unknown

RIBOSOMAL PROTEIN-RELATED
AT2G33340

Predicted

two hybrid

FSW = 0.0031

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G09180

Predicted

interologs mapping

FSW = 0.0661

Unknown

ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING
AT2G42500

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.2557

Unknown

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G47250

Predicted

Affinity Capture-MS

FSW = 0.4618

Unknown

PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G10430

Predicted

Affinity Capture-MS

FSW = 0.2182

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G56330

Predicted

interologs mapping

FSW = 0.0559

Unknown

ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING
AT5G42790

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4278

Unknown

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G35690

Predicted

two hybrid

two hybrid

FSW = 0.0097

Unknown

ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT4G16760

Predicted

two hybrid

FSW = 0.0220

Unknown

ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE
AT4G16830

Predicted

interologs mapping

FSW = 0.0109

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT5G67270

Predicted

two hybrid

interaction prediction

FSW = 0.0125

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G58660

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0227

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT1G48920

Predicted

interologs mapping

FSW = 0.0416

Unknown

ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G47690

Predicted

two hybrid

FSW = 0.0165

Unknown

ATEB1A MICROTUBULE BINDING
AT1G13060

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.5198

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16470

Predicted

in vivo

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4316

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G63960

Predicted

interaction prediction

FSW = 0.0048

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G05840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3756

Unknown

PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G79210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vivo

in vitro

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2835

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0972

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G13330Predicted

Affinity Capture-MS

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2503

Unknown

BINDING
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1011

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT4G32530

Predicted

interologs mapping

FSW = 0.0441

Unknown

VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT5G40580

Predicted

Affinity Capture-MS

Co-crystal Structure

Co-crystal Structure

Affinity Capture-MS

FSW = 0.4829

Unknown

PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G27430

Predicted

Co-crystal Structure

Affinity Capture-MS

Co-crystal Structure

two hybrid

Co-expression

FSW = 0.5079

Unknown

PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G25610

Predicted

interologs mapping

FSW = 0.0632

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT5G35980

Predicted

interaction prediction

FSW = 0.0095

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454