Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G56450 - ( PBG1 peptidase/ threonine-type endopeptidase )
39 Proteins interacs with AT1G56450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.1846
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G21720 | PredictedCo-crystal StructureAffinity Capture-MSAffinity Capture-MS | FSW = 0.5036
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5186
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22630 | PredictedPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementsynthetic growth defecttwo hybridCo-expression | FSW = 0.3364
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5791
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5013
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5119
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1832
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementtwo hybridAffinity Capture-MSPhenotypic Enhancementsynthetic growth defectinteraction prediction | FSW = 0.2727
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedCo-crystal StructureCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4986
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4737
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G06380 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0244
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT2G33340 | Predictedtwo hybrid | FSW = 0.0031
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G09180 | Predictedinterologs mapping | FSW = 0.0661
| Unknown | ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2557
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G47250 | PredictedAffinity Capture-MS | FSW = 0.4618
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.2182
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G56330 | Predictedinterologs mapping | FSW = 0.0559
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4278
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G35690 | Predictedtwo hybridtwo hybrid | FSW = 0.0097
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT4G16830 | Predictedinterologs mapping | FSW = 0.0109
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G67270 | Predictedtwo hybridinteraction prediction | FSW = 0.0125
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G58660 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0227
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G48920 | Predictedinterologs mapping | FSW = 0.0416
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G47690 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | ATEB1A MICROTUBULE BINDING |
AT1G13060 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.5198
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4316
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G63960 | Predictedinteraction prediction | FSW = 0.0048
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3756
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vitroAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2835
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0972
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G13330 | PredictedAffinity Capture-MSsynthetic growth defectPhenotypic Enhancement | FSW = 0.2503
| Unknown | BINDING |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1011
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT4G32530 | Predictedinterologs mapping | FSW = 0.0441
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT5G40580 | PredictedAffinity Capture-MSCo-crystal StructureCo-crystal StructureAffinity Capture-MS | FSW = 0.4829
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G27430 | PredictedCo-crystal StructureAffinity Capture-MSCo-crystal Structuretwo hybridCo-expression | FSW = 0.5079
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G25610 | Predictedinterologs mapping | FSW = 0.0632
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT5G35980 | Predictedinteraction prediction | FSW = 0.0095
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454