Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G58030 - ( CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) amino acid transmembrane transporter )
19 Proteins interacs with AT1G58030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G14010 | Predictedtwo hybrid | FSW = 0.0261
| Class C:vacuole | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G03720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2667
| Class C:vacuole | CAT4 (CATIONIC AMINO ACID TRANSPORTER 4) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G44110 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | ATJ3 PROTEIN BINDING |
AT3G55360 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT4G21120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1957
| Unknown | AAT1 (AMINO ACID TRANSPORTER 1) L-GLUTAMATE TRANSMEMBRANE TRANSPORTER/ L-LYSINE TRANSMEMBRANE TRANSPORTER/ ARGININE TRANSMEMBRANE TRANSPORTER/ CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT3G25220 | Predictedpull down | FSW = 0.0395
| Unknown | FKBP15-1 FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G01910 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT3G03110 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT2G32600 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G62120 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT2G22425 | Predictedtwo hybrid | FSW = 0.0606
| Unknown | PEPTIDASE |
AT3G06460 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G16650 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT5G36940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2424
| Unknown | CAT3 (CATIONIC AMINO ACID TRANSPORTER 3) BASIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G25560 | PredictedGene fusion method | FSW = 0.1039
| Unknown | NIK2 (NSP-INTERACTING KINASE 2) ATP BINDING / PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454