Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59580 - ( ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP kinase/ kinase/ protein kinase )
87 Proteins interacs with AT1G59580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G37010 | Experimentalfilter binding | FSW = 0.0038
| Unknown | CALTRACTIN PUTATIVE / CENTRIN PUTATIVE |
AT5G40440 | Experimental | FSW = 0.0430
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
AT4G27280 | Experimentalfilter binding | FSW = 0.0356
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G54490 | Experimentalfilter binding | FSW = 0.0296
| Unknown | PBP1 (PINOID-BINDING PROTEIN 1) CALCIUM ION BINDING / PROTEIN BINDING |
AT1G18350 | Experimental | FSW = 0.0406
| Unknown | ATMKK7 MAP KINASE KINASE/ KINASE |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G09590 | PredictedSynthetic Lethalitytwo hybridPhenotypic EnhancementSynthetic Lethality | FSW = 0.0602
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G72730 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0758
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT2G37270 | PredictedSynthetic LethalityAffinity Capture-Westerntwo hybridtwo hybridReconstituted ComplexSynthetic Lethality | FSW = 0.0384
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | UNKNOWN PROTEIN |
AT4G01370 | PredictedShared biological functionGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1443
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0748
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G65240 | PredictedSynthetic Lethality | FSW = 0.0199
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G55400 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.0423
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G29810 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0993
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G55690 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | GLUTAREDOXIN PUTATIVE |
AT1G06390 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2039
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT5G58800 | PredictedReconstituted Complex | FSW = 0.1111
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.0716
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT4G18710 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2462
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT4G15000 | Predictedtwo hybridAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0254
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G31660 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0107
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0789
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G03415 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT1G02680 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G18040 | PredictedPhylogenetic profile method | FSW = 0.0611
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT2G44900 | Predictedtwo hybridSynthetic Lethality | FSW = 0.1392
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
AT5G61000 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT4G24440 | PredictedPhenotypic Suppression | FSW = 0.0066
| Unknown | TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S) |
AT5G17690 | PredictedPhenotypic Enhancement | FSW = 0.0043
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G58230 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0222
| Unknown | WD-40 REPEAT FAMILY PROTEIN / BEIGE-RELATED |
AT4G07820 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0928
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0792
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT2G43460 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0269
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT5G63960 | PredictedSynthetic Lethalitytwo hybridtwo hybridAffinity Capture-WesternSynthetic Lethality | FSW = 0.0469
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G08260 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0475
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G25155 | PredictedPhenotypic Suppression | FSW = 0.0173
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G14910 | Predictedtwo hybrid | FSW = 0.0672
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT1G55810 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1154
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT2G46280 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridReconstituted Complexinterologs mapping | FSW = 0.1186
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G13330 | Predictedtwo hybrid | FSW = 0.0630
| Unknown | BINDING |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.0603
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G37660 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G66640 | Predictedbiochemical | FSW = 0.0111
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT1G74140 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CHLOROPLAST CONTAINS INTERPRO DOMAIN/S PEPTIDASE S54 RHOMBOID (INTERPROIPR002610) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RHOMBOID FAMILY PROTEIN (TAIRAT1G741301) HAS 484 BLAST HITS TO 484 PROTEINS IN 189 SPECIES ARCHAE - 2 BACTERIA - 267 METAZOA - 30 FUNGI - 47 PLANTS - 36 VIRUSES - 0 OTHER EUKARYOTES - 102 (SOURCE NCBI BLINK) |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0738
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G30650 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0667
| Unknown | CATALYTIC |
AT2G31260 | PredictedPhenotypic Suppression | FSW = 0.0117
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G38905 | Predictedinterologs mapping | FSW = 0.0188
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12490 | Predictedsynthetic growth defect | FSW = 0.0742
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G59290 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0246
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G60245 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1237
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G37490 | PredictedSynthetic Lethality | FSW = 0.0833
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G21820 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0238
| Unknown | BINDING / CALMODULIN BINDING |
AT2G35320 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0113
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT3G58040 | PredictedPhenotypic Enhancement | FSW = 0.0063
| Unknown | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT4G35780 | PredictedPhenotypic Suppression | FSW = 0.0233
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G17700 | PredictedPhenotypic Suppression | FSW = 0.0235
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G53570 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10210 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1357
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT5G67380 | PredictedGene fusion methodCo-expression | FSW = 0.0130
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G18170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2843
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT2G43790 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1287
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT4G36450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3304
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT3G45640 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2717
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G14365 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0538
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN |
AT3G63330 | PredictedGene fusion methodCo-expression | FSW = 0.1075
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G59790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1874
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G07880 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1924
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT2G46070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1287
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.2752
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14640 | PredictedPhylogenetic profile method | FSW = 0.2308
| Unknown | SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.1966
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30980 | PredictedPhylogenetic profile method | FSW = 0.1673
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454