Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59725 - ( DNAJ heat shock protein putative )

9 Proteins interacs with AT1G59725
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G44110

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0923

Unknown

ATJ3 PROTEIN BINDING
AT5G22060

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0945

Unknown

ATJ2 PROTEIN BINDING
AT5G25530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4482

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT4G28480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT3G08910

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3683

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G10350

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2940

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT2G20560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3427

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT3G47940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2776

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G01390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2078

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454