Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59830 - ( PP2A-1 protein serine/threonine phosphatase )

28 Proteins interacs with AT1G59830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G03730

Experimental

Reconstituted Complex

FSW = 0.0129

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G07910

Predicted

Gene fusion method

FSW = 0.0516

Class C:

plasma membrane

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G10430

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1704

Class C:

plasma membrane

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G42500

Predicted

Phylogenetic profile method

FSW = 0.2303

Class C:

plasma membrane

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G03240Predicted

Gene fusion method

FSW = 0.0924

Unknown

UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING
AT3G58500

Predicted

Phylogenetic profile method

FSW = 0.3647

Unknown

PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G19980

Predicted

Phylogenetic profile method

FSW = 0.0523

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G69740

Predicted

Phenotypic Suppression

FSW = 0.0450

Unknown

HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT4G26720

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1729

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G64040

Predicted

Phylogenetic profile method

FSW = 0.5961

Unknown

TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G31470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0776

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G69960

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3158

Unknown

PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0090

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G19720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0703

Unknown

RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0382

Unknown

PUX4 PROTEIN BINDING
AT5G17440

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN
AT5G28470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0417

Unknown

TRANSPORTER
AT5G55260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4144

Unknown

PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G39840

Predicted

Phylogenetic profile method

FSW = 0.1131

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G59160

Predicted

Phylogenetic profile method

FSW = 0.2639

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G50370

Predicted

Phylogenetic profile method

FSW = 0.1218

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT4G11240

Predicted

Phylogenetic profile method

FSW = 0.3799

Unknown

TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G05580

Predicted

Phylogenetic profile method

FSW = 0.5961

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT2G29400

Predicted

Phylogenetic profile method

FSW = 0.1963

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G43380

Predicted

Phylogenetic profile method

FSW = 0.3945

Unknown

TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G46820

Predicted

Phylogenetic profile method

FSW = 0.4662

Unknown

TOPP5 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G27840

Predicted

Phylogenetic profile method

FSW = 0.5550

Unknown

TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G11650

Predicted

Gene fusion method

FSW = 0.0441

Unknown

RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454