Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59830 - ( PP2A-1 protein serine/threonine phosphatase )
28 Proteins interacs with AT1G59830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G03730 | ExperimentalReconstituted Complex | FSW = 0.0129
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G07910 | PredictedGene fusion method | FSW = 0.0516
| Class C:plasma membrane | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G10430 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1704
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G42500 | PredictedPhylogenetic profile method | FSW = 0.2303
| Class C:plasma membrane | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G03240 | PredictedGene fusion method | FSW = 0.0924
| Unknown | UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING |
AT3G58500 | PredictedPhylogenetic profile method | FSW = 0.3647
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedPhylogenetic profile method | FSW = 0.0523
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G69740 | PredictedPhenotypic Suppression | FSW = 0.0450
| Unknown | HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT4G26720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1729
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G64040 | PredictedPhylogenetic profile method | FSW = 0.5961
| Unknown | TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G31470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0776
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G69960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3158
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G19720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0703
| Unknown | RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G04210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0382
| Unknown | PUX4 PROTEIN BINDING |
AT5G17440 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN |
AT5G28470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0417
| Unknown | TRANSPORTER |
AT5G55260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4144
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G39840 | PredictedPhylogenetic profile method | FSW = 0.1131
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59160 | PredictedPhylogenetic profile method | FSW = 0.2639
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G50370 | PredictedPhylogenetic profile method | FSW = 0.1218
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT4G11240 | PredictedPhylogenetic profile method | FSW = 0.3799
| Unknown | TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G05580 | PredictedPhylogenetic profile method | FSW = 0.5961
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT2G29400 | PredictedPhylogenetic profile method | FSW = 0.1963
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G43380 | PredictedPhylogenetic profile method | FSW = 0.3945
| Unknown | TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G46820 | PredictedPhylogenetic profile method | FSW = 0.4662
| Unknown | TOPP5 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G27840 | PredictedPhylogenetic profile method | FSW = 0.5550
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G11650 | PredictedGene fusion method | FSW = 0.0441
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454