Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59900 - ( AT-E1 ALPHA oxidoreductase acting on the aldehyde or oxo group of donors disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) )
32 Proteins interacs with AT1G59900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G50850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivointeraction predictionEnriched domain pairCo-expression | FSW = 0.1898
| Class C:mitochondrion | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT1G54220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitro | FSW = 0.2722
| Class C:mitochondrion | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
AT1G49630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1548
| Class C:mitochondrion | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING |
AT5G09300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1572
| Class C:mitochondrion | 2-OXOISOVALERATE DEHYDROGENASE PUTATIVE / 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE PUTATIVE / BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE E1 ALPHA SUBUNIT PUTATIVE |
AT1G24180 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2081
| Class C:mitochondrion | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0644
| Unknown | BINDING |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0116
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G23630 | PredictedPhenotypic Suppression | FSW = 0.0462
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT4G29810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0095
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0176
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G12370 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0716
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0480
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0967
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G47620 | PredictedPhenotypic Suppression | FSW = 0.0471
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT1G51310 | PredictedPhenotypic Enhancement | FSW = 0.0658
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G34150 | PredictedPhenotypic Suppression | FSW = 0.1330
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G64550 | PredictedPhenotypic Enhancement | FSW = 0.0204
| Unknown | ATGCN3 TRANSPORTER |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0341
| Unknown | SGA2 |
AT1G67190 | PredictedSynthetic Lethality | FSW = 0.0624
| Unknown | F-BOX FAMILY PROTEIN |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0197
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0309
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1017
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G55070 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.1234
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0082
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT2G22690 | PredictedPhenotypic Enhancement | FSW = 0.0865
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.0405
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0612
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G02760 | Predictedco-fractionationCo-fractionation | FSW = 0.0627
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
AT5G41340 | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454