Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59950 - ( aldo/keto reductase putative )

11 Proteins interacs with AT1G59950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0138

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G37790

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2321

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G18480

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT2G37760

Predicted

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.2818

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G59960

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6385

Unknown

ALDO/KETO REDUCTASE PUTATIVE
AT5G01670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3430

Unknown

ALDOSE REDUCTASE PUTATIVE
AT3G53880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1625

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G62420

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7399

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G37770

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6464

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G21260

Predicted

Phylogenetic profile method

FSW = 0.6882

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G21250

Predicted

Phylogenetic profile method

FSW = 0.1739

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454