Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61000 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN mitosis LOCATED IN plasma membrane EXPRESSED IN cultured cell CONTAINS InterPro DOMAIN/s Kinetochore protein Nuf2 (InterProIPR005549) BEST Arabidopsis thaliana protein match is myosin heavy chain-related (TAIRAT1G643301) Has 41010 Blast hits to 23184 proteins in 1264 species Archae - 616 Bacteria - 3998 Metazoa - 20566 Fungi - 2893 Plants - 1316 Viruses - 149 Other Eukaryotes - 11472 (source NCBI BLink) )

26 Proteins interacs with AT1G61000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G05420

Predicted

two hybrid

FSW = 0.0345

Class C:

plasma membrane

ACBP4 (ACYL-COA BINDING PROTEIN 4) ACYL-COA BINDING
AT1G20090

Predicted

interaction prediction

two hybrid

FSW = 0.0084

Class C:

plasma membrane

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT2G45490

Predicted

Phenotypic Suppression

FSW = 0.0235

Class C:

nucleus

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT4G05190

Predicted

two hybrid

FSW = 0.0823

Class C:

nucleus

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT3G19840

Predicted

two hybrid

FSW = 0.0115

Class C:

nucleus

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT3G13940

Predicted

Synthetic Lethality

FSW = 0.0080

Class C:

nucleus

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G21700

Predicted

two hybrid

FSW = 0.0226

Class C:

nucleus

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G24310

Predicted

two hybrid

interaction prediction

FSW = 0.0125

Class C:

nucleus

UNKNOWN PROTEIN
AT3G54670

Predicted

two hybrid

interaction prediction

FSW = 0.1001

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT2G44950

Predicted

two hybrid

two hybrid

interaction prediction

FSW = 0.0338

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G23250

Predicted

two hybrid

FSW = 0.0368

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT2G31970

Predicted

two hybrid

interaction prediction

FSW = 0.0293

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT3G25980

Predicted

Colocalization

FSW = 0.0481

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G36200

Predicted

two hybrid

interaction prediction

FSW = 0.0779

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G54630

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

co-fractionation

Co-fractionation

interologs mapping

Synthetic Lethality

interaction prediction

FSW = 0.0439

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)
AT4G16280

Predicted

two hybrid

FSW = 0.0750

Unknown

FCA RNA BINDING
AT5G24350

Predicted

two hybrid

FSW = 0.0275

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SECRETORY PATHWAY SEC39 (INTERPROIPR013244) HAS 170 BLAST HITS TO 130 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 5 METAZOA - 90 FUNGI - 13 PLANTS - 54 VIRUSES - 0 OTHER EUKARYOTES - 8 (SOURCE NCBI BLINK)
AT2G27170

Predicted

interaction prediction

two hybrid

FSW = 0.0793

Unknown

TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT4G27180

Predicted

two hybrid

two hybrid

FSW = 0.0642

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT5G48600

Predicted

two hybrid

interaction prediction

FSW = 0.0632

Unknown

ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER
AT3G01090

Predicted

two hybrid

FSW = 0.0047

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT5G48180

Predicted

two hybrid

FSW = 0.0726

Unknown

NSP5 (NITRILE SPECIFIER PROTEIN 5)
AT1G55255Predicted

two hybrid

FSW = 0.0412

Unknown

NSP5 (NITRILE SPECIFIER PROTEIN 5)
AT2G35390

Predicted

interaction prediction

FSW = 0.0072

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT5G04420

Predicted

interaction prediction

FSW = 0.0197

Unknown

KELCH REPEAT-CONTAINING PROTEIN
AT5G54670

Predicted

interaction prediction

FSW = 0.1341

Unknown

ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454