Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61000 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN mitosis LOCATED IN plasma membrane EXPRESSED IN cultured cell CONTAINS InterPro DOMAIN/s Kinetochore protein Nuf2 (InterProIPR005549) BEST Arabidopsis thaliana protein match is myosin heavy chain-related (TAIRAT1G643301) Has 41010 Blast hits to 23184 proteins in 1264 species Archae - 616 Bacteria - 3998 Metazoa - 20566 Fungi - 2893 Plants - 1316 Viruses - 149 Other Eukaryotes - 11472 (source NCBI BLink) )
26 Proteins interacs with AT1G61000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G05420 | Predictedtwo hybrid | FSW = 0.0345
| Class C:plasma membrane | ACBP4 (ACYL-COA BINDING PROTEIN 4) ACYL-COA BINDING |
AT1G20090 | Predictedinteraction predictiontwo hybrid | FSW = 0.0084
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT2G45490 | PredictedPhenotypic Suppression | FSW = 0.0235
| Class C:nucleus | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G05190 | Predictedtwo hybrid | FSW = 0.0823
| Class C:nucleus | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT3G19840 | Predictedtwo hybrid | FSW = 0.0115
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G13940 | PredictedSynthetic Lethality | FSW = 0.0080
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G21700 | Predictedtwo hybrid | FSW = 0.0226
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G24310 | Predictedtwo hybridinteraction prediction | FSW = 0.0125
| Class C:nucleus | UNKNOWN PROTEIN |
AT3G54670 | Predictedtwo hybridinteraction prediction | FSW = 0.1001
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT2G44950 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.0338
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G23250 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE |
AT2G31970 | Predictedtwo hybridinteraction prediction | FSW = 0.0293
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G25980 | PredictedColocalization | FSW = 0.0481
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | Predictedtwo hybridinteraction prediction | FSW = 0.0779
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G54630 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingSynthetic Lethalityinteraction prediction | FSW = 0.0439
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G16280 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | FCA RNA BINDING |
AT5G24350 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SECRETORY PATHWAY SEC39 (INTERPROIPR013244) HAS 170 BLAST HITS TO 130 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 5 METAZOA - 90 FUNGI - 13 PLANTS - 54 VIRUSES - 0 OTHER EUKARYOTES - 8 (SOURCE NCBI BLINK) |
AT2G27170 | Predictedinteraction predictiontwo hybrid | FSW = 0.0793
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT4G27180 | Predictedtwo hybridtwo hybrid | FSW = 0.0642
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G48600 | Predictedtwo hybridinteraction prediction | FSW = 0.0632
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT3G01090 | Predictedtwo hybrid | FSW = 0.0047
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G48180 | Predictedtwo hybrid | FSW = 0.0726
| Unknown | NSP5 (NITRILE SPECIFIER PROTEIN 5) |
AT1G55255 | Predictedtwo hybrid | FSW = 0.0412
| Unknown | NSP5 (NITRILE SPECIFIER PROTEIN 5) |
AT2G35390 | Predictedinteraction prediction | FSW = 0.0072
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT5G04420 | Predictedinteraction prediction | FSW = 0.0197
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G54670 | Predictedinteraction prediction | FSW = 0.1341
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454