Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61010 - ( CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) protein binding )

42 Proteins interacs with AT1G61010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G23880

Experimental

two hybrid

pull down

pull down

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

in vitro

two hybrid

affinity technology

FSW = 0.5104

Unknown

CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT5G51660

Experimental

Affinity Capture-Western

FSW = 0.5225

Unknown

CPSF160 NUCLEIC ACID BINDING
AT2G25850

Experimental

FSW = 0.0437

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G13480

Experimental

Affinity Capture-Western

FSW = 0.2796

Unknown

FY PROTEIN BINDING
AT2G01730

Experimental

Affinity Capture-Western

FSW = 0.1036

Unknown

ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II) CATALYTIC/ PROTEIN BINDING
AT3G04680

Experimental

Affinity Capture-Western

FSW = 0.2358

Unknown

CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING
AT1G73820

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2893

Unknown

SSU72-LIKE FAMILY PROTEIN
AT1G10070

Predicted

biochemical

FSW = 0.0058

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G61520

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

LHCA3 CHLOROPHYLL BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0041

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G43670

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0906

Unknown

FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE
AT4G22120

Predicted

two hybrid

FSW = 0.0095

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT5G19990

Predicted

two hybrid

two hybrid

FSW = 0.0180

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT4G07950

Predicted

interaction prediction

FSW = 0.0270

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT3G54610

Predicted

Affinity Capture-MS

FSW = 0.0191

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.0347

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT1G01210

Predicted

two hybrid

FSW = 0.0340

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT3G14080

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0864

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G54910

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1245

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G17680

Predicted

Reconstituted Complex

Affinity Capture-MS

FSW = 0.1452

Unknown

TRANSCRIPTION FACTOR-RELATED
AT1G17980

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.3794

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT4G26840

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0053

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G20000

Predicted

two hybrid

FSW = 0.0186

Unknown

26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT1G17760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2670

Unknown

CSTF77 PROTEIN BINDING
AT1G21570

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2967

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G10210

Predicted

biochemical

FSW = 0.0056

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G73960

Predicted

Affinity Capture-MS

FSW = 0.1050

Unknown

TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0118

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G39840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

biochemical

interaction prediction

FSW = 0.1250

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G44590

Predicted

two hybrid

FSW = 0.0426

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT3G54380

Predicted

Affinity Capture-MS

FSW = 0.0081

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G04885

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2084

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT5G09390

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0358

Unknown

CD2-BINDING PROTEIN-RELATED
AT5G14530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2799

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G21170

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G38890

Predicted

Affinity Capture-MS

FSW = 0.0071

Unknown

EXORIBONUCLEASE-RELATED
AT5G47430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4450

Unknown

ZINC ION BINDING
AT5G66630

Predicted

Affinity Capture-Western

Reconstituted Complex

Co-purification

Affinity Capture-MS

FSW = 0.1469

Unknown

DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING
AT2G29400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

biochemical

FSW = 0.1293

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G17410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3740

Unknown

ZINC ION BINDING
AT1G73840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4437

Unknown

ESP1 (ENHANCED SILENCING PHENOTYPE 1)
AT1G66500

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2801

Unknown

ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454