Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61010 - ( CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) protein binding )
42 Proteins interacs with AT1G61010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23880 | Experimentaltwo hybridpull downpull downtwo hybridReconstituted ComplexAffinity Capture-MSAffinity Capture-Westernin vitrotwo hybridaffinity technology | FSW = 0.5104
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G51660 | ExperimentalAffinity Capture-Western | FSW = 0.5225
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT2G25850 | Experimental | FSW = 0.0437
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G13480 | ExperimentalAffinity Capture-Western | FSW = 0.2796
| Unknown | FY PROTEIN BINDING |
AT2G01730 | ExperimentalAffinity Capture-Western | FSW = 0.1036
| Unknown | ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II) CATALYTIC/ PROTEIN BINDING |
AT3G04680 | ExperimentalAffinity Capture-Western | FSW = 0.2358
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT1G73820 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2893
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT1G10070 | Predictedbiochemical | FSW = 0.0058
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G61520 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | LHCA3 CHLOROPHYLL BINDING |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G43670 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0906
| Unknown | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
AT4G22120 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G19990 | Predictedtwo hybridtwo hybrid | FSW = 0.0180
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G07950 | Predictedinteraction prediction | FSW = 0.0270
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT3G54610 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT1G01210 | Predictedtwo hybrid | FSW = 0.0340
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT3G14080 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0864
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G54910 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1245
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G17680 | PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.1452
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G17980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.3794
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0053
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G20000 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT1G17760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2670
| Unknown | CSTF77 PROTEIN BINDING |
AT1G21570 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2967
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G10210 | Predictedbiochemical | FSW = 0.0056
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G73960 | PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G39840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemicalinteraction prediction | FSW = 0.1250
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G44590 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G04885 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2084
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT5G09390 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0358
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2799
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G47430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4450
| Unknown | ZINC ION BINDING |
AT5G66630 | PredictedAffinity Capture-WesternReconstituted ComplexCo-purificationAffinity Capture-MS | FSW = 0.1469
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT2G29400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1293
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G17410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3740
| Unknown | ZINC ION BINDING |
AT1G73840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4437
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
AT1G66500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2801
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454