Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61700 - ( DNA-directed RNA polymerase II putative (RPB10) )
29 Proteins interacs with AT1G61700| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G35800
   | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridCo-crystal StructureAffinity Capture-MSAffinity Capture-Westernfar western blottinginteraction prediction | FSW = 0.1250
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G42790
| PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G57660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2540
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
| AT3G13940
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1513
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G14170
| Predictedtwo hybridtwo hybrid | FSW = 0.0168
| Unknown | CHC1 |
| AT3G16980
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2682
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT3G25940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4034
| Unknown | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
| AT2G15430
| PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSfar western blottingReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.1754
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G75510
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2048
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
| AT3G52090
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3712
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT4G21710
| PredictedAffinity Capture-MSCo-crystal Structuretwo hybridAffinity Capture-MSfar western blottinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2510
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G59180
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4545
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
| AT5G40820
| PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
| AT2G29540
| PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MS | FSW = 0.1351
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT5G41910
| PredictedAffinity Capture-MS | FSW = 0.2981
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
| AT1G29940 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.2441
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT1G54250
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6545
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
| AT1G60620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.1869
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G06790
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1282
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT2G32850
| Predictedbiochemical | FSW = 0.0085
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G22320
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4642
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT4G08500
| Predictedbiochemical | FSW = 0.0160
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
| AT5G41010
| PredictedAffinity Capture-MS | FSW = 0.4452
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G45140
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2981
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G60040
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2683
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
| AT5G51940
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5959
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G45180
| Predictedinterologs mapping | FSW = 0.0269
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT5G58003
| PredictedAffinity Capture-MS | FSW = 0.3275
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
| AT1G11475
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.6895
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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