Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G62740 - ( stress-inducible protein putative )
32 Proteins interacs with AT1G62740| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G12580
   | PredictedPhenotypic EnhancementReconstituted Complextwo hybridAffinity Capture-Western | FSW = 0.0759
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT1G16030
| Predictedtwo hybrid | FSW = 0.0430
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
| AT5G56030
| PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.0867
| Class C:plasma membrane | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT5G22060
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1794
| Class C:plasma membrane | ATJ2 PROTEIN BINDING |
| AT5G52640
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-WesternReconstituted Complexsynthetic growth defectReconstituted ComplexAffinity Capture-WesternSynthetic Lethalitytwo hybridAffinity Capture-WesternReconstituted Complextwo hybridin vitroReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSinterologs mappingsynthetic growth defectSynthetic LethalityCo-purificationinterologs mappingEnriched domain pairCo-expression | FSW = 0.0316
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT1G79530
| PredictedAffinity Capture-Western | FSW = 0.0143
| Class C:plasma membrane | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT4G02450
| Predictedin vitro | FSW = 0.0731
| Class C:plasma membrane | GLYCINE-RICH PROTEIN |
| AT2G30110
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0422
| Class C:plasma membrane | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
| AT1G79930
| Predictedsynthetic growth defectinterologs mapping | FSW = 0.1077
| Class C:plasma membrane | HSP91 ATP BINDING |
| AT2G17890
| PredictedGene fusion method | FSW = 0.0199
| Class C:plasma membrane | CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G65040
| PredictedAffinity Capture-MS | FSW = 0.0831
| Class C:plasma membrane | PROTEIN BINDING / ZINC ION BINDING |
| AT1G44170
| Predictedtwo hybrid | FSW = 0.0278
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
| AT5G58350
| PredictedGene fusion method | FSW = 0.0914
| Unknown | WNK4 (WITH NO K (=LYSINE) 4) KINASE/ PROTEIN KINASE |
| AT5G41370
| PredictedAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.0384
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
| AT2G41500
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0240
| Unknown | EMB2776 NUCLEOTIDE BINDING |
| AT3G22830
| Predictedsynthetic growth defect | FSW = 0.1846
| Unknown | AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G18040
| PredictedSynthetic Lethality | FSW = 0.0356
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
| AT1G04980
| Predictedinterologs mappingSynthetic Lethality | FSW = 0.0577
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
| AT5G58290
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0222
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT5G40820
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0219
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
| AT5G07590
| PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
| AT1G74310
| PredictedReconstituted ComplexAffinity Capture-Westerninteraction prediction | FSW = 0.1419
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G79990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0410
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
| AT3G09920
| PredictedSynthetic Lethality | FSW = 0.0641
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
| AT3G58560
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0185
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT4G16970
| PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0293
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G77720
| PredictedSynthetic Lethality | FSW = 0.0879
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G47460
| PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | ATSMC2 TRANSPORTER |
| AT4G04940
| PredictedSynthetic Lethality | FSW = 0.0263
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G05560
| Predictedinterologs mapping | FSW = 0.0241
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
| AT1G12270
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4817
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT4G12400
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0975
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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