Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G62850 - ( translation release factor )

16 Proteins interacs with AT1G62850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16030

Predicted

Phenotypic Enhancement

FSW = 0.0164

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G63490

Predicted

pull down

FSW = 0.0623

Unknown

RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT5G66470

Predicted

pull down

FSW = 0.1693

Unknown

GTP BINDING / RNA BINDING
AT2G43030

Predicted

pull down

FSW = 0.0473

Unknown

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
ATCG00380Predicted

pull down

FSW = 0.1075

Unknown

CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00830Predicted

pull down

FSW = 0.0692

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

pull down

FSW = 0.0803

Unknown

30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT5G08180

Predicted

two hybrid

two hybrid

FSW = 0.0211

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G11330

Predicted

two hybrid

FSW = 0.0184

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT2G20060

Predicted

pull down

FSW = 0.0961

Unknown

RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT1G71530

Predicted

Phenotypic Enhancement

FSW = 0.0622

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.0258

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

MATE EFFLUX PROTEIN-RELATED
AT4G36070

Predicted

Affinity Capture-MS

FSW = 0.0353

Unknown

CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454