Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63160 - ( replication factor C 40 kDa putative )

53 Proteins interacs with AT1G63160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G05710

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT2G06510

Predicted

Synthetic Lethality

FSW = 0.1716

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT4G01370

Predicted

Phenotypic Enhancement

FSW = 0.0382

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT5G20290

Predicted

two hybrid

FSW = 0.0050

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT4G26970

Predicted

interaction prediction

FSW = 0.0175

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G44780

Predicted

interaction prediction

Co-expression

FSW = 0.0486

Unknown

UNKNOWN PROTEIN
AT1G09830

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0372

Unknown

PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2)
AT2G45300

Predicted

Phenotypic Enhancement

FSW = 0.0626

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT4G35830

Predicted

Affinity Capture-MS

FSW = 0.0530

Unknown

ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT3G12050

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0263

Unknown

AHA1 DOMAIN-CONTAINING PROTEIN
AT1G08130

Predicted

Affinity Capture-Western

FSW = 0.2297

Unknown

ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT1G21690

Predicted

Co-purification

Co-purification

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2129

Unknown

EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.0867

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.0553

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT2G29570

Predicted

in vitro

in vitro

in vitro

in vitro

in vitro

Co-expression

FSW = 0.1039

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G07370

Predicted

Reconstituted Complex

interologs mapping

interaction prediction

Co-expression

FSW = 0.2862

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT3G20010

Predicted

Phenotypic Enhancement

FSW = 0.0632

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.1388

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT3G19210

Predicted

Phenotypic Enhancement

FSW = 0.1219

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G67630

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0828

Unknown

POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G26710

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0332

Unknown

GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE
AT5G66130

Predicted

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

in vivo

Co-purification

FSW = 0.2800

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G57450

Predicted

Phenotypic Enhancement

FSW = 0.1173

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G58290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0300

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G54260

Predicted

Phenotypic Enhancement

FSW = 0.1499

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20850

Predicted

Phenotypic Enhancement

FSW = 0.0916

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G77470

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Reconstituted Complex

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

interaction prediction

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4037

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT5G14520

Predicted

two hybrid

Co-expression

FSW = 0.0028

Unknown

PESCADILLO-RELATED
AT1G04730Predicted

Reconstituted Complex

Phenotypic Enhancement

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Phenotypic Enhancement

Affinity Capture-MS

Reconstituted Complex

Co-purification

interaction prediction

Co-expression

FSW = 0.1738

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT2G44580

Predicted

Affinity Capture-Western

FSW = 0.1423

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G52220

Predicted

Affinity Capture-Western

FSW = 0.0577

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CHROMOSOME TRANSMISSION FIDELITY PROTEIN 8 (INTERPROIPR018607) HAS 85 BLAST HITS TO 85 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 54 FUNGI - 13 PLANTS - 11 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK)
AT1G05910

Predicted

Phenotypic Enhancement

FSW = 0.0551

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1224

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1310

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G08880

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0300

Unknown

H2AXA DNA BINDING
AT1G66740

Predicted

Affinity Capture-Western

FSW = 0.1388

Unknown

SGA2
AT1G79890

Predicted

Phenotypic Enhancement

FSW = 0.0843

Unknown

HELICASE-RELATED
AT3G42660

Predicted

Phenotypic Enhancement

FSW = 0.1252

Unknown

NUCLEOTIDE BINDING
AT5G22010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2760

Unknown

ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G27740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3311

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G50320

Predicted

Phenotypic Enhancement

FSW = 0.0084

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT1G74310

Predicted

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0075

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G28390

Predicted

Phenotypic Enhancement

FSW = 0.0089

Unknown

SAND FAMILY PROTEIN
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.0263

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G02820

Predicted

Phenotypic Enhancement

FSW = 0.1522

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1208

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G62120

Predicted

Affinity Capture-MS

FSW = 0.0114

Unknown

TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN
AT4G30870

Predicted

Phenotypic Enhancement

FSW = 0.0584

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G26680

Predicted

Phenotypic Enhancement

FSW = 0.1563

Unknown

ENDONUCLEASE PUTATIVE
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.1277

Unknown

BINDING
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.0791

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT4G20020

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0287

Unknown

UNKNOWN PROTEIN
AT4G02730

Predicted

Gene fusion method

FSW = 0.0150

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454