Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63290 - ( ribulose-phosphate 3-epimerase cytosolic putative / pentose-5-phosphate 3-epimerase putative )

43 Proteins interacs with AT1G63290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01850

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1277

Class C:

plasma membrane

cytosol

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.4448

Class C:

plasma membrane

cytosol

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT1G55690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2510

Class C:

plasma membrane

cytosol

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.3923

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G36160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5538

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G49010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0487

Class C:

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G12580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3529

Class C:

plasma membrane

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT1G18540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6141

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT5G20010

Predicted

Affinity Capture-MS

FSW = 0.5795

Class C:

plasma membrane

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G61430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5355

Class C:

plasma membrane

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT1G20760

Predicted

Affinity Capture-MS

FSW = 0.4444

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G77210

Predicted

Affinity Capture-MS

FSW = 0.0130

Class C:

plasma membrane

SUGAR TRANSPORTER PUTATIVE
AT4G35310

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6237

Class C:

plasma membrane

CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G14350

Predicted

Affinity Capture-MS

FSW = 0.0111

Class C:

plasma membrane

PROTEIN KINASE FAMILY PROTEIN
AT3G13080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3472

Unknown

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G20390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4769

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT2G31170

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4267

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0280

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.1073

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT5G61410

Predicted

Phylogenetic profile method

FSW = 0.0383

Unknown

RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE
AT1G21640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4976

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G19160

Predicted

Affinity Capture-MS

FSW = 0.3384

Unknown

ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT1G74060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3250

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3022

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT2G23460

Predicted

Affinity Capture-MS

FSW = 0.3547

Unknown

XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4491

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT1G05180

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G54290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4042

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.4167

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.2892

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.2120

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4662

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2546

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G16090

Predicted

Affinity Capture-MS

FSW = 0.6237

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G37540

Predicted

Affinity Capture-MS

FSW = 0.4889

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G47940

Predicted

Affinity Capture-MS

FSW = 0.2816

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT4G36800

Predicted

Affinity Capture-MS

FSW = 0.6158

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT5G06420

Predicted

Affinity Capture-MS

FSW = 0.5489

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.3924

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G17000

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2809

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G24410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1274

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G37850

Predicted

Affinity Capture-MS

FSW = 0.5849

Unknown

SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.3883

Unknown

WD-40 REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454