Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63370 - ( flavin-containing monooxygenase family protein / FMO family protein )

49 Proteins interacs with AT1G63370
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

Affinity Capture-MS

FSW = 0.0206

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT5G12010

Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

UNKNOWN PROTEIN
AT3G03920

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT1G80190

Predicted

Affinity Capture-MS

FSW = 0.0433

Unknown

PSF1 (PARTNER OF SLD FIVE 1)
AT5G62880

Predicted

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Co-purification

co-fractionation

Co-fractionation

Phenotypic Enhancement

FSW = 0.2444

Unknown

ARAC10 GTP BINDING
AT3G13560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.2324

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.1289

Unknown

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.0975

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT1G64230

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT5G12350

Predicted

Affinity Capture-MS

FSW = 0.0429

Unknown

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT5G22780

Predicted

Affinity Capture-MS

FSW = 0.1109

Unknown

ADAPTIN FAMILY PROTEIN
AT4G00520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1822

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0168

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G79020

Predicted

Reconstituted Complex

FSW = 0.0169

Unknown

TRANSCRIPTION FACTOR-RELATED
AT1G02680

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

co-fractionation

Co-fractionation

FSW = 0.1241

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.0441

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G47630

Predicted

Affinity Capture-MS

FSW = 0.0030

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.0318

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT4G25780

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1452

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G17800

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

ARAC1 GTP BINDING
AT5G18380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0886

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT3G54820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0865

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

Co-purification

FSW = 0.3234

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT3G12530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0476

Unknown

PSF2
AT4G29430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

Affinity Capture-Western

Co-purification

FSW = 0.3812

Unknown

RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G28560

Predicted

Gene fusion method

FSW = 0.0295

Unknown

RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING
AT1G04480Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

Reconstituted Complex

synthetic growth defect

FSW = 0.1659

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G05910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0723

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.1399

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G30220

Predicted

Affinity Capture-MS

FSW = 0.0088

Unknown

INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.1361

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT3G23570

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1012

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G62760

Predicted

Affinity Capture-MS

FSW = 0.0637

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE
AT4G33200

Predicted

Affinity Capture-MS

FSW = 0.0955

Unknown

XI-I MOTOR/ PROTEIN BINDING
AT5G01430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0299

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G06600

Predicted

Affinity Capture-MS

FSW = 0.0096

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT1G80460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1194

Unknown

NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT2G39590

Predicted

Affinity Capture-MS

FSW = 0.0584

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT4G39330

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0875

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT1G62620

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.3729

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G62570

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3319

Unknown

FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE
AT1G62560

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3319

Unknown

FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 6-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYL
AT1G62540

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3319

Unknown

FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYL
AT1G62600

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3266

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G65860

Predicted

Phylogenetic profile method

FSW = 0.3450

Unknown

FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 6-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYL
AT1G12140

Predicted

Phylogenetic profile method

FSW = 0.2427

Unknown

FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5) 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE
AT1G12200

Predicted

Phylogenetic profile method

FSW = 0.2911

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G12160

Predicted

Phylogenetic profile method

FSW = 0.3319

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT5G07800

Predicted

Phylogenetic profile method

FSW = 0.2899

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454