Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63370 - ( flavin-containing monooxygenase family protein / FMO family protein )
49 Proteins interacs with AT1G63370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT5G12010 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | UNKNOWN PROTEIN |
AT3G03920 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G62880 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSCo-purificationReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationco-fractionationCo-fractionationPhenotypic Enhancement | FSW = 0.2444
| Unknown | ARAC10 GTP BINDING |
AT3G13560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2324
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1289
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0975
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G64230 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.1109
| Unknown | ADAPTIN FAMILY PROTEIN |
AT4G00520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1822
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | PredictedReconstituted Complex | FSW = 0.0169
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G02680 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationco-fractionationCo-fractionation | FSW = 0.1241
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G25780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1452
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G17800 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | ARAC1 GTP BINDING |
AT5G18380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.0886
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT3G54820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0865
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.3234
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G12530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0476
| Unknown | PSF2 |
AT4G29430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-WesternCo-purification | FSW = 0.3812
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G28560 | PredictedGene fusion method | FSW = 0.0295
| Unknown | RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING |
AT1G04480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted Complexsynthetic growth defect | FSW = 0.1659
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G05910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0723
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G30220 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.1361
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1012
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G62760 | PredictedAffinity Capture-MS | FSW = 0.0637
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G33200 | PredictedAffinity Capture-MS | FSW = 0.0955
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0299
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06600 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G80460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1194
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0584
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT4G39330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0875
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G62620 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.3729
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G62570 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3319
| Unknown | FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE |
AT1G62560 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3319
| Unknown | FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 6-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYL |
AT1G62540 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3319
| Unknown | FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYL |
AT1G62600 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3266
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G65860 | PredictedPhylogenetic profile method | FSW = 0.3450
| Unknown | FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 6-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYL |
AT1G12140 | PredictedPhylogenetic profile method | FSW = 0.2427
| Unknown | FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5) 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE |
AT1G12200 | PredictedPhylogenetic profile method | FSW = 0.2911
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G12160 | PredictedPhylogenetic profile method | FSW = 0.3319
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT5G07800 | PredictedPhylogenetic profile method | FSW = 0.2899
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454