Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63660 - ( GMP synthase (glutamine-hydrolyzing) putative / glutamine amidotransferase putative )
58 Proteins interacs with AT1G63660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0948
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.1334
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT5G24780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2805
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0201
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3140
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.1516
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G09820 | Predictedtwo hybrid | FSW = 0.0412
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G69830 | Predictedpull down | FSW = 0.0155
| Unknown | AMY3 (ALPHA-AMYLASE-LIKE 3) ALPHA-AMYLASE |
AT1G18870 | Predictedtwo hybrid | FSW = 0.0695
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.1478
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT1G50310 | Predictedinterologs mapping | FSW = 0.0768
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G02870 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1812
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2536
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT1G06730 | Predictedpull down | FSW = 0.0437
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0037
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2343
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G29390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0922
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G39795 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3159
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2081
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0981
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | ATPRB1 |
AT5G12020 | Predictedtwo hybrid | FSW = 0.0138
| Unknown | HSP176II (176 KDA CLASS II HEAT SHOCK PROTEIN) |
AT5G53360 | PredictedPhenotypic Enhancement | FSW = 0.0052
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT1G04200 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | UNKNOWN PROTEIN |
AT2G35320 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT1G01510 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0087
| Unknown | AN (ANGUSTIFOLIA) PROTEIN BINDING |
AT1G34370 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G61790 | PredictedPhenotypic Enhancement | FSW = 0.0154
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT5G66360 | Predictedpull down | FSW = 0.0194
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.1247
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1696
| Unknown | UNKNOWN PROTEIN |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0038
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G03410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3464
| Unknown | MO25 FAMILY PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.1925
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G20410 | Predictedtwo hybrid | FSW = 0.0516
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G37760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1627
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3107
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G05760 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G52560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2148
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.2683
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.2171
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2284
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2150
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G49970 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.1878
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G59890 | Predictedtwo hybrid | FSW = 0.0579
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0607
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2093
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.1346
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.2490
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.1022
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1534
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT3G58040 | PredictedPhenotypic Enhancement | FSW = 0.0094
| Unknown | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0041
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT2G29500 | Predictedtwo hybrid | FSW = 0.0164
| Unknown | 176 KDA CLASS I SMALL HEAT SHOCK PROTEIN (HSP176B-CI) |
AT1G62860 | PredictedGene fusion method | FSW = 0.0164
| Unknown | 176 KDA CLASS I SMALL HEAT SHOCK PROTEIN (HSP176B-CI) |
AT3G16710 | PredictedGene fusion method | FSW = 0.0202
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 10 PLANT STRUCTURES EXPRESSED DURING LP10 TEN LEAVES VISIBLE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G411701) HAS 25882 BLAST HITS TO 6002 PROTEINS IN 187 SPECIES ARCHAE - 3 BACTERIA - 22 METAZOA - 744 FUNGI - 522 PLANTS - 23419 VIRUSES - 0 OTHER EUKARYOTES - 1172 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454