Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64170 - ( ATCHX16 (CATION/H+ EXCHANGER 16) monovalent cationproton antiporter/ sodiumhydrogen antiporter )
11 Proteins interacs with AT1G64170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G12650 | PredictedPhenotypic Enhancement | FSW = 0.1091
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLASMA MEMBRANE VACUOLE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G351601) HAS 983 BLAST HITS TO 980 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 434 FUNGI - 144 PLANTS - 228 VIRUSES - 0 OTHER EUKARYOTES - 177 (SOURCE NCBI BLINK) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0079
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G40400 | Predictedtwo hybrid | FSW = 0.0632
| Unknown | UNKNOWN PROTEIN |
AT3G14930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3208
| Unknown | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
AT1G13560 | PredictedAffinity Capture-MS | FSW = 0.1559
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT2G28180 | PredictedGene fusion methodCo-expression | FSW = 0.1931
| Unknown | ATCHX8 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G07140 | PredictedPhenotypic Enhancement | FSW = 0.0147
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0273
| Unknown | UNKNOWN PROTEIN |
AT3G60550 | PredictedAffinity Capture-MS | FSW = 0.1861
| Unknown | CYCP32 (CYCLIN P32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G10360 | PredictedPhenotypic Enhancement | FSW = 0.0952
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G13020 | PredictedPhenotypic Enhancement | FSW = 0.0381
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454